AutismKB 2.0

Annotation Detail for SLC7A1


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Basic Information Top
Gene Symbol:SLC7A1 ( ATRC1,CAT-1,ERR,HCAT1,REC1L )
Gene Full Name: solute carrier family 7 (cationic amino acid transporter, y+ system), member 1
Band: 13q12.3
Quick LinksEntrez ID:6541; OMIM: 104615; Uniprot ID:CTR1_HUMAN; ENSEMBL ID: ENSG00000139514; HGNC ID: 11057
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
216N-linked (GlcNAc...).
226N-linked (GlcNAc...).
235N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
226N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
235N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
226N-linkedHMM predict
235N-linkedHMM predict
319N-linkedHMM predict
320N-linkedHMM predict
343O-linkedHMM predict
446Phosphothreonine(CK2)HMM predict
447Phosphoserine(CK2)HMM predict
462N-linkedHMM predict
482Phosphoserine(CDC2)HMM predict
620Phosphothreonine(CDC2)HMM predict
620Phosphothreonine(MAPK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003045
  • Location:chr13 28981551-29067720
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb GrowingGSE19898 29068068 29068176 108 402
Rb SenescentGSE19898 29067879 29068253 374 346
p130 SenescentGSE19898 29068059 29068380 321 499
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 28980341 28980582 241 1090
CTCF CD4SISSRdata 28980341 28980582 241 1090
CTCF G2GSE9613 28979566 28980931 1365 1303
hScc1 BcellGSE12603 28979489 28980859 1370 1378
hScc1 CdLSGSE12603 28980145 28980823 678 1068
hScc1 G2GSE9613 28979524 28980823 1299 1378
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 28983130 28983369 239 0
CTCF G2GSE9613 28985619 28986011 392 0
CTCF G2GSE9613 28986612 28986901 289 0
CTCF G2GSE9613 28987292 28987704 412 0
CTCF G2GSE9613 28989055 28989425 370 0
CTCF G2GSE9613 28996049 28996404 355 0
CTCF G2GSE9613 28997308 28997507 199 0
CTCF G2GSE9613 28997928 28998094 166 0
CTCF G2GSE9613 28998922 28999187 265 0
CTCF G2GSE9613 29010567 29010740 173 0
CTCF G2GSE9613 29011214 29011503 289 0
CTCF G2GSE9613 29015588 29016195 607 0
CTCF G2GSE9613 29018903 29019380 477 0
CTCF G2GSE9613 29021474 29021765 291 0
CTCF G2GSE9613 29025315 29025715 400 0
CTCF G2GSE9613 29037763 29038090 327 0
CTCF G2GSE9613 29061326 29061848 522 0
CTCF G2GSE9613 29064953 29065137 184 0
CTCF G2GSE9613 29066894 29068162 1268 0
Myc hESGSE17917 29041154 29041413 259 0
Oct1 H2O2-HelaGSE14283 29039769 29039798 29 0
Oct1 HelaGSE14283 29028739 29028775 36 0
Oct1 HelaGSE14283 29039768 29039796 28 0
Oct1 HelaGSE14283 29045228 29045259 31 0
P300 T30-glioblastomaGSE21026 28992624 28993511 887 0
PHF8 293TGSE20725 29066960 29067954 994 0
RARA MCF7GSE15244 29026299 29026968 669 0
RARG MCF7GSE15244 29026263 29026968 705 0
RARG MCF7GSE15244 29044511 29045065 554 0
RARG MCF7GSE15244 29050469 29050827 358 0
RARG MCF7GSE15244 29062151 29062345 194 0
TFAP2C MCF7GSE21234 29039504 29040067 563 0
TFAP2C MCF7GSE21234 29059621 29060130 509 0
hScc1 BcellGSE12603 28985735 28986797 1062 0
hScc1 BcellGSE12603 28987359 28987527 168 0
hScc1 BcellGSE12603 29007978 29008356 378 0
hScc1 BcellGSE12603 29015407 29015754 347 0
hScc1 BcellGSE12603 29057749 29057965 216 0
hScc1 BcellGSE12603 29067066 29068162 1096 0
hScc1 G2GSE9613 29066971 29068184 1213 0
p130 QuiescentGSE19898 29067246 29067426 180 0
p130 shRbSenescentGSE19898 29067059 29067527 468 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7a hsa-let-7a-1 9 20091141
hsa-let-7a hsa-let-7a-2 11 20091141
hsa-let-7a hsa-let-7a-3 22 20091141
hsa-let-7a* hsa-let-7a-1 9 20091141
hsa-let-7a* hsa-let-7a-3 22 20091141
hsa-let-7b hsa-let-7b 22 20091141
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 20091141
hsa-let-7b* hsa-let-7b 22 18668040
hsa-let-7c hsa-let-7c 21 20091141
hsa-let-7c* hsa-let-7c 21 20091141
hsa-let-7d hsa-let-7d 9 20091141
hsa-let-7d* hsa-let-7d 9 20091141
hsa-let-7e hsa-let-7e 19 20091141
hsa-let-7e* hsa-let-7e 19 20091141
hsa-let-7f hsa-let-7f-1 9 20091141
hsa-let-7f hsa-let-7f-2 X 20091141
hsa-let-7f-1* hsa-let-7f-1 9 20091141
hsa-let-7f-2* hsa-let-7f-2 X 20091141
hsa-let-7g hsa-let-7g 3 20091141
hsa-let-7g* hsa-let-7g 3 20091141
hsa-let-7i hsa-let-7i 12 20091141
hsa-let-7i* hsa-let-7i 12 20091141
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-122 hsa-mir-122 18 19296470
hsa-miR-122 hsa-mir-122 18 19067360
hsa-miR-122 hsa-mir-122 18 17381334
hsa-miR-122 hsa-mir-122 18 17381319
hsa-miR-122 hsa-mir-122 18 17179747
hsa-miR-122 hsa-mir-122 18 16777601
hsa-miR-122* hsa-mir-122 18 19296470
hsa-miR-122* hsa-mir-122 18 19067360
hsa-miR-122* hsa-mir-122 18 17381334
hsa-miR-122* hsa-mir-122 18 17381319
hsa-miR-122* hsa-mir-122 18 17179747
hsa-miR-122* hsa-mir-122 18 16777601
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
1100 Unknown pSILAC miR-16 SLC7A1 down 50-25% 18668040
1280 Unknown pSILAC miR-30 SLC7A1 down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000139514 n_a n_a n_a n_a n_a
ENSG00000139514 n_a n_a n_a n_a n_a
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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