AutismKB 2.0

Annotation Detail for SLC10A2


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Basic Information Top
Gene Symbol:SLC10A2 ( ASBT,IBAT,ISBT,NTCP2,PBAM )
Gene Full Name: solute carrier family 10 (sodium/bile acid cotransporter family), member 2
Band: 13q33.1
Quick LinksEntrez ID:6555; OMIM: 601295; Uniprot ID:NTCP2_HUMAN; ENSEMBL ID: ENSG00000125255; HGNC ID: 10906
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
10N-linked (GlcNAc...).
Location(AA) Modifications Resource
10N-linked (GlcNAc...).Swiss-Prot 53.0
Location(AA) Modification Resource
10N-linkedHMM predict
105S-palmitoylHMM predict
106S-palmitoylHMM predict
144S-palmitoylHMM predict
328N-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_000452
  • Location:chr13 102494350-102517196
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 102520992 102521023 31 3811
Oct1 HelaGSE14283 102520978 102521026 48 3806
Oct1 HelaGSE14283 102525786 102525814 28 8604
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 102484393 102484620 227 9844
Oct1 HelaGSE14283 102492505 102492535 30 1831
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 102509729 102509759 30 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018