AutismKB 2.0

Annotation Detail for GRAMD3


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Basic Information Top
Gene Symbol:GRAMD3 ( FLJ21313,NS3TP2 )
Gene Full Name: GRAM domain containing 3
Band: 5q23.2
Quick LinksEntrez ID:65983; OMIM: NA; Uniprot ID:GRAM3_HUMAN; ENSEMBL ID: ENSG00000155324; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
221Phosphoserine (By similarity).
252Phosphoserine.
Location(AA) Modifications Resource
221Phosphoserine (By similarity).Swiss-Prot 53.0
252Phosphoserine.Swiss-Prot 53.0
252PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
29Phosphoserine(CK2)HMM predict
29Phosphoserine(IKK)HMM predict
44Phosphoserine(IKK)HMM predict
49Phosphoserine(IKK)HMM predict
49PhosphoserineHMM predict
49Phosphoserine(MAPK)HMM predict
49Phosphoserine(CDK)HMM predict
49Phosphoserine(CDC2)HMM predict
51Phosphothreonine(MAPK)HMM predict
53O-linkedHMM predict
95Phosphothreonine(PKC)HMM predict
100Phosphoserine(IKK)HMM predict
100Phosphoserine(PKG)HMM predict
102Phosphoserine(CK1)HMM predict
104Phosphoserine(CK1)HMM predict
104Phosphoserine(ATM)HMM predict
225Phosphoserine(CDC2)HMM predict
227N-linkedHMM predict
230O-linkedHMM predict
233N-linkedHMM predict
252Phosphoserine(CK1)HMM predict
271Phosphoserine(ATM)HMM predict
273Phosphoserine(IKK)HMM predict
273Phosphoserine(ATM)HMM predict
275Phosphothreonine(CDK)HMM predict
275Phosphothreonine(MAPK)HMM predict
275Phosphothreonine(CDC2)HMM predict
275PhosphothreonineHMM predict
287O-linkedHMM predict
319Phosphoserine(PKA)HMM predict
387O-linkedHMM predict
397Phosphoserine(ATM)HMM predict
419LysineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_023927
  • Location:chr5 125786999-125857944
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ER Fulvestrant-MCF7GSE14664 125771978 125772014 36 15004
H3K4me2 HCT116GSE10453 125786221 125786870 649 454
Oct1 HelaGSE14283 125768822 125768884 62 18147
Oct1 HelaGSE14283 125771984 125772036 52 14990
Oct1 HelaGSE14283 125784804 125784838 34 2179
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 125863670 125863937 267 5859
CTCF CD4SISSRdata 125863670 125863937 267 5859
ER Fulvestrant-MCF7GSE14664 125872410 125872442 32 14482
Nanog hESGSE18292 125863566 125863966 400 5822
Sox2 hESGSE18292 125863565 125863969 404 5823
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FoxA1 MCF7MACSdata 125828517 125828738 221 0
Oct1 HelaGSE14283 125798636 125798676 40 0
Oct1 HelaGSE14283 125834294 125834343 49 0
Oct1 HelaGSE14283 125844800 125844842 42 0
PHF8 Hs68plusFBSGSE20725 125786563 125787852 1289 0
PolII HeLaGSE12783 125786395 125788039 1644 0
Rb QuiescentGSE19898 125810510 125810732 222 0
STAT1 HeLaGSE12782 125809099 125811254 2155 0
STAT1 HeLaGSE12782 125851352 125853521 2169 0
STAT1 HeLaGSE12783 125809229 125811220 1991 0
STAT1 HeLaGSE12783 125851352 125853487 2135 0
STAT1 IFNSISSRdata 125809757 125811084 1327 0
TFAP2C MCF7GSE21234 125828418 125828917 499 0
hScc1 BcellGSE12603 125786839 125787230 391 0
hScc1 CdLSGSE12603 125856463 125856859 396 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
21400 mRNA NS3TP2 chr5 125786999 125857945 267 EST chr5 125844001 125853962Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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