Annotation Detail for SMARCD1
Basic Information Top
| Gene Symbol: | SMARCD1 ( BAF60A,CRACD1,Rsc6p ) |
|---|---|
| Gene Full Name: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 |
| Band: | 12q13.12 |
| Quick Links | Entrez ID:6602; OMIM: 601735; Uniprot ID:SMRD1_HUMAN; ENSEMBL ID: ENSG00000066117; HGNC ID: 11106 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 10 | Phosphotyrosine(Abl) | HMM predict |
| 31 | Phosphothreonine(CDK) | HMM predict |
| 31 | Phosphothreonine(CDC2) | HMM predict |
| 45 | N-linked | HMM predict |
| 105 | Phosphoserine(ATM) | HMM predict |
| 108 | Phosphotyrosine(INSR) | HMM predict |
| 108 | Phosphotyrosine(Syk) | HMM predict |
| 156 | Phosphoserine(CK2) | HMM predict |
| 183 | Phosphoserine(CK1) | HMM predict |
| 316 | Phosphoserine(PKG) | HMM predict |
| 374 | Phosphoserine(ATM) | HMM predict |
- RefSeq ID: NM_003076
- Location:chr12 48765278-48780689
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 48765037 | 48765314 | 277 | 103 |
| CTCF | CD4 | SISSRdata | 48765037 | 48765314 | 277 | 103 |
| ETS1 | Jurkat | GSE17954 | 48764635 | 48765884 | 1249 | 19 |
| p130 | Senescent | GSE19898 | 48764667 | 48764963 | 296 | 464 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 48768642 | 48769089 | 447 | 0 |
| CTCF | CD4 | SISSRdata | 48768642 | 48769089 | 447 | 0 |
| CTCF | Hela | GSE12889 | 48768727 | 48769011 | 284 | 0 |
| CTCF | G2 | GSE9613 | 48765132 | 48765978 | 846 | 0 |
| CTCF | G2 | GSE9613 | 48768662 | 48769372 | 710 | 0 |
| CTCF | G2 | GSE9613 | 48780034 | 48780345 | 311 | 0 |
| FOXA1 | MCF7 | GSE15244 | 48765436 | 48766200 | 764 | 0 |
| FOXA1 | MCF7 | GSE15244 | 48768437 | 48769189 | 752 | 0 |
| FoxA1 | MCF7 | MACSdata | 48768714 | 48768966 | 252 | 0 |
| H3ac | HepG2 | E | 48765798 | 48767836 | 2038 | 0 |
| KLF4 | hES | GSE17917 | 48765266 | 48765684 | 418 | 0 |
| TAF | Hela | GSE8489 | 48770461 | 48770630 | 169 | 0 |
| hScc1 | Bcell | GSE12603 | 48768698 | 48769116 | 418 | 0 |
| hScc1 | CdLS | GSE12603 | 48768662 | 48769116 | 454 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-122 | hsa-mir-122 | 18 | 19487572 |
| hsa-miR-122* | hsa-mir-122 | 18 | 19487572 |
| hsa-miR-125b | hsa-mir-125b-1 | 11 | 21212412 |
| hsa-miR-125b | hsa-mir-125b-2 | 21 | 21212412 |
| hsa-miR-99a | hsa-mir-99a | 21 | 21212412 |
| hsa-miR-99a* | hsa-mir-99a | 21 | 21212412 |
| hsa-miR-99b | hsa-mir-99b | 19 | 21212412 |
| hsa-miR-99b* | hsa-mir-99b | 19 | 21212412 |
| No data |
Cis-Nats regulation