AutismKB 2.0

Annotation Detail for SNAPC4


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SNAPC4 ( FLJ13451,PTFalpha,SNAP190 )
Gene Full Name: small nuclear RNA activating complex, polypeptide 4, 190kDa
Band: 9q34.3
Quick LinksEntrez ID:6621; OMIM: 602777; Uniprot ID:SNPC4_HUMAN; ENSEMBL ID: ENSG00000165684; HGNC ID: 11137
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
1N-acetylmethionine.
626Phosphoserine.
1157Phosphothreonine.
1224Phosphoserine.
1398Phosphoserine.
1400Phosphoserine.
Location(AA) Modifications Resource
1224Phosphoserine.Swiss-Prot 53.0
1224PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
39Phosphoserine(CK1)HMM predict
41Phosphoserine(CK2)HMM predict
45Phosphoserine(CK1)HMM predict
59Phosphoserine(CK2)HMM predict
68Phosphoserine(CK2)HMM predict
223Phosphoserine(CK2)HMM predict
276Phosphoserine(CK2)HMM predict
276PhosphoserineHMM predict
326Phosphothreonine(PKC)HMM predict
489Phosphoserine(PKA)HMM predict
489Phosphoserine(IKK)HMM predict
519Phosphoserine(IKK)HMM predict
522O-linkedHMM predict
524O-linkedHMM predict
526Phosphoserine(CK1)HMM predict
528Phosphoserine(ATM)HMM predict
530Phosphoserine(CK1)HMM predict
541Phosphoserine(CK2)HMM predict
541Phosphoserine(CK1)HMM predict
542Phosphoserine(CK2)HMM predict
564Phosphotyrosine(Syk)HMM predict
564Phosphotyrosine(SRC)HMM predict
564Phosphotyrosine(INSR)HMM predict
578Phosphoserine(IKK)HMM predict
578Phosphoserine(PKG)HMM predict
580Phosphoserine(ATM)HMM predict
597O-linkedHMM predict
599Phosphoserine(ATM)HMM predict
604O-linkedHMM predict
607Phosphoserine(CAMK2)HMM predict
607Phosphoserine(ATM)HMM predict
607Phosphoserine(IKK)HMM predict
616O-linkedHMM predict
617O-linkedHMM predict
626O-linkedHMM predict
700O-linkedHMM predict
700O-linkedHMM predict
702Phosphoserine(CDK)HMM predict
702O-linkedHMM predict
702Phosphoserine(CDC2)HMM predict
706O-linkedHMM predict
724Phosphothreonine(PKA)HMM predict
836O-linkedHMM predict
840Phosphoserine(CK1)HMM predict
841Phosphothreonine(MAPK)HMM predict
855Phosphoserine(IKK)HMM predict
868Phosphoserine(PKB)HMM predict
892Phosphothreonine(PKC)HMM predict
936Phosphothreonine(CDK)HMM predict
936Phosphothreonine(CDC2)HMM predict
983Phosphothreonine(PKA)HMM predict
994O-linkedHMM predict
1004O-linkedHMM predict
1004Phosphoserine(ATM)HMM predict
1026Phosphoserine(ATM)HMM predict
1049O-linkedHMM predict
1049Phosphoserine(CDC2)HMM predict
1051Phosphothreonine(MAPK)HMM predict
1051O-linkedHMM predict
1051O-linkedHMM predict
1071O-linkedHMM predict
1131O-linkedHMM predict
1131Phosphoserine(CK1)HMM predict
1161Phosphoserine(ATM)HMM predict
1161O-linkedHMM predict
1190Phosphoserine(CK2)HMM predict
1190Phosphoserine(CK1)HMM predict
1190O-linkedHMM predict
1191O-linkedHMM predict
1191Phosphoserine(IKK)HMM predict
1221O-linkedHMM predict
1224O-linkedHMM predict
1224Phosphoserine(CDC2)HMM predict
1224Phosphoserine(IKK)HMM predict
1228O-linkedHMM predict
1275Phosphoserine(ATM)HMM predict
1398Phosphoserine(CAMK2)HMM predict
1398Phosphoserine(CK1)HMM predict
1400Phosphoserine(CK2)HMM predict
1407Phosphoserine(CK1)HMM predict
1421O-linkedHMM predict
1462Phosphothreonine(PKC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003086
  • Location:chr9 138389850-138412709
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
GABP k562GSE8489 138412309 138413970 1661 430
H3ac HepG2E 138412489 138413725 1236 398
NFkBII GM10847GSE19485 138413215 138414845 1630 1321
PHF8 HeLaGSE20725 138413525 138415321 1796 1714
hScc1 BcellGSE12603 138413970 138414553 583 1552
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct4 hESGSE17917 138398126 138398274 148 0
TFAP2C MCF7GSE21234 138403654 138404105 451 0
hScc1 BcellGSE12603 138391656 138392156 500 0
hScc1 BcellGSE12603 138395866 138396098 232 0
hScc1 BcellGSE12603 138397633 138398041 408 0
hScc1 BcellGSE12603 138401498 138401822 324 0
hScc1 BcellGSE12603 138405991 138406233 242 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved