AutismKB 2.0

Annotation Detail for SNRPD3


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Basic Information Top
Gene Symbol:SNRPD3 ( SMD3,Sm-D3 )
Gene Full Name: small nuclear ribonucleoprotein D3 polypeptide 18kDa
Band: 22q11.23
Quick LinksEntrez ID:6634; OMIM: 601062; Uniprot ID:SMD3_HUMAN; ENSEMBL ID: ENSG00000100028; HGNC ID: 11160
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
97Omega-N-methylated arginine.
Location(AA) Modifications Resource
97Omega-N-methylated arginine.Swiss-Prot 53.0
Location(AA) Modification Resource
45N-linkedHMM predict
62Phosphotyrosine(Jak)HMM predict
112MethylarginineHMM predict
126ArginineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004175
  • Location:chr22 23281617-23298508
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 23280538 23282496 1958 101
Rb QuiescentGSE19898 23281137 23282077 940 11
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K4me3 colorectalcancer 23281953 23282990 1037 0
H3ac HepG2E 23281365 23284375 3010 0
H3ac HepG2E 23284839 23285518 679 0
KLF4 hESGSE17917 23297264 23297418 154 0
NFkBII GM12878GSE19485 23293353 23294391 1038 0
NFkBII GM18526GSE19485 23293591 23294255 664 0
PHF8 Hs68minusFBSGSE20725 23281419 23282373 954 0
Rb GrowingGSE19898 23281326 23282036 710 0
Rb QuiescentGSE19898 23282097 23282200 103 0
Rb SenescentGSE19898 23281231 23282323 1092 0
Rb shRbQuiescentGSE19898 23281674 23281987 313 0
Rb shRbSenescenceGSE19898 23281349 23281898 549 0
p130 QuiescentGSE19898 23281239 23282249 1010 0
p130 SenescentGSE19898 23281293 23282253 960 0
p130 shRbQuiescentGSE19898 23281394 23282243 849 0
p130 shRbSenescentGSE19898 23281213 23282328 1115 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
17260 mRNA SNRPD3 chr22 23276171 23293063 279 EST chr22 23264477 23276450Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018