Annotation Detail for SNRPD3


Gene Symbol: | SNRPD3 ( SMD3,Sm-D3 ) |
---|---|
Gene Full Name: | small nuclear ribonucleoprotein D3 polypeptide 18kDa |
Band: | 22q11.23 |
Quick Links | Entrez ID:6634; OMIM: 601062; Uniprot ID:SMD3_HUMAN; ENSEMBL ID: ENSG00000100028; HGNC ID: 11160 |
Relate to Another Database: | SFARIGene; denovo-db |
Location(AA) | Modification | |
---|---|---|
97 | Omega-N-methylated arginine. |
Location(AA) | Modifications | Resource |
---|---|---|
97 | Omega-N-methylated arginine. | Swiss-Prot 53.0 |
Location(AA) | Modification | Resource |
---|---|---|
45 | N-linked | HMM predict |
62 | Phosphotyrosine(Jak) | HMM predict |
112 | Methylarginine | HMM predict |
126 | Arginine | HMM predict |
- RefSeq ID: NM_004175
- Location:chr22 23281617-23298508
- strand:+
Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
---|---|---|---|---|---|---|
ETS1 | Jurkat | GSE17954 | 23280538 | 23282496 | 1958 | 101 |
Rb | Quiescent | GSE19898 | 23281137 | 23282077 | 940 | 11 |
No data |
Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
---|---|---|---|---|---|---|
H3K4me3 | colorectal | cancer | 23281953 | 23282990 | 1037 | 0 |
H3ac | HepG2 | E | 23281365 | 23284375 | 3010 | 0 |
H3ac | HepG2 | E | 23284839 | 23285518 | 679 | 0 |
KLF4 | hES | GSE17917 | 23297264 | 23297418 | 154 | 0 |
NFkBII | GM12878 | GSE19485 | 23293353 | 23294391 | 1038 | 0 |
NFkBII | GM18526 | GSE19485 | 23293591 | 23294255 | 664 | 0 |
PHF8 | Hs68minusFBS | GSE20725 | 23281419 | 23282373 | 954 | 0 |
Rb | Growing | GSE19898 | 23281326 | 23282036 | 710 | 0 |
Rb | Quiescent | GSE19898 | 23282097 | 23282200 | 103 | 0 |
Rb | Senescent | GSE19898 | 23281231 | 23282323 | 1092 | 0 |
Rb | shRbQuiescent | GSE19898 | 23281674 | 23281987 | 313 | 0 |
Rb | shRbSenescence | GSE19898 | 23281349 | 23281898 | 549 | 0 |
p130 | Quiescent | GSE19898 | 23281239 | 23282249 | 1010 | 0 |
p130 | Senescent | GSE19898 | 23281293 | 23282253 | 960 | 0 |
p130 | shRbQuiescent | GSE19898 | 23281394 | 23282243 | 849 | 0 |
p130 | shRbSenescent | GSE19898 | 23281213 | 23282328 | 1115 | 0 |
Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
---|---|---|---|---|---|---|---|---|---|---|---|---|
17260 | mRNA | SNRPD3 | chr22 | 23276171 | 23293063 | 279 | EST | chr22 | 23264477 | 23276450 | Sense/Antisense (SA) pairs | |