Annotation Detail for SNX1
Basic Information Top
| Gene Symbol: | SNX1 ( HsT17379,MGC8664,SNX1A,Vps5 ) |
|---|---|
| Gene Full Name: | sorting nexin 1 |
| Band: | 15q22.31 |
| Quick Links | Entrez ID:6642; OMIM: 601272; Uniprot ID:SNX1_HUMAN; ENSEMBL ID: ENSG00000028528; HGNC ID: 11172 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 32 | Phosphoserine. | |
| 39 | Phosphoserine. | |
| 41 | Phosphothreonine. | |
| 188 | Phosphoserine. | |
| 237 | N6-acetyllysine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 54 | O-linked | HMM predict |
| 70 | N-linked | HMM predict |
| 75 | N-linked | HMM predict |
| 123 | N-linked | HMM predict |
| 124 | O-linked | HMM predict |
| 125 | O-linked | HMM predict |
| 130 | Phosphothreonine(PKC) | HMM predict |
| 131 | Phosphotyrosine(SRC) | HMM predict |
| 131 | Phosphotyrosine(Syk) | HMM predict |
| 202 | Phosphoserine(ATM) | HMM predict |
| 303 | N-linked | HMM predict |
| 368 | Phosphoserine(PKG) | HMM predict |
| 368 | Phosphoserine(ATM) | HMM predict |
| 426 | Phosphothreonine(PKC) | HMM predict |
| 472 | Phosphothreonine(PKC) | HMM predict |
| 503 | Phosphoserine(ATM) | HMM predict |
- RefSeq ID: NM_003099
- Location:chr15 62175229-62223483
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3K4me2 | HCT116 | GSE10453 | 62174080 | 62174953 | 873 | 713 |
| H3ac | HepG2 | E | 62174080 | 62175169 | 1089 | 605 |
| PHF8 | HeLa | GSE20725 | 62174699 | 62175735 | 1036 | 13 |
| TAF | Hela | GSE8489 | 62174080 | 62175025 | 945 | 677 |
| USF1 | HepG2 | E | 62174080 | 62175169 | 1089 | 605 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Gata1 | K562 | GSE18868 | 62225941 | 62226666 | 725 | 2820 |
| Gata2 | K562 | GSE18868 | 62226089 | 62226599 | 510 | 2861 |
| VDR | GM10855-stim | GSE22484 | 62222432 | 62224750 | 2318 | 108 |
| VDR | GM10861-stim | GSE22484 | 62222788 | 62225741 | 2953 | 781 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ETS1 | Jurkat | GSE17954 | 62174684 | 62175792 | 1108 | 0 |
| H3K4me3 | colorectal | cancer | 62175632 | 62176090 | 458 | 0 |
| H3ac | HepG2 | E | 62175422 | 62176090 | 668 | 0 |
| H3ac | HepG2 | E | 62176834 | 62177609 | 775 | 0 |
| PHF8 | 293T | GSE20725 | 62174945 | 62175831 | 886 | 0 |
| Rb | Senescent | GSE19898 | 62174988 | 62175768 | 780 | 0 |
| TFAP2C | MCF7 | GSE21234 | 62213661 | 62214130 | 469 | 0 |
| p130 | shRbQuiescent | GSE19898 | 62174926 | 62175627 | 701 | 0 |
Validated miRNA targets