Annotation Detail for SRM
Basic Information Top
| Gene Symbol: | SRM ( PAPT,SPDSY,SPS1,SRML1 ) |
|---|---|
| Gene Full Name: | spermidine synthase |
| Band: | 1p36.22 |
| Quick Links | Entrez ID:6723; OMIM: 182891; Uniprot ID:SPEE_HUMAN; ENSEMBL ID: ENSG00000116649; HGNC ID: 11296 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 1 | N-acetylmethionine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 59 | Phosphotyrosine(Jak) | HMM predict |
| 79 | Phosphotyrosine(EGFR) | HMM predict |
| 190 | Phosphotyrosine(SRC) | HMM predict |
| 233 | Phosphotyrosine(Jak) | HMM predict |
| 237 | O-linked | HMM predict |
- RefSeq ID: NM_003132
- Location:chr1 11037235-11042677
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Fos | K562 | GSE19551 | 11042616 | 11043133 | 517 | 197 |
| H3ac | HepG2 | E | 11043107 | 11043755 | 648 | 754 |
| H3ac | HepG2 | E | 11044263 | 11044588 | 325 | 1748 |
| H3ac | HepG2 | E | 11045481 | 11045857 | 376 | 2992 |
| Myc | hES | GSE17917 | 11042597 | 11042844 | 247 | 43 |
| PHF8 | 293T | GSE20725 | 11042068 | 11043469 | 1401 | 91 |
| Rb | Quiescent | GSE19898 | 11043633 | 11043739 | 106 | 1009 |
| Rb | shRbSenescence | GSE19898 | 11042671 | 11042945 | 274 | 131 |
| p130 | Senescent | GSE19898 | 11042946 | 11043198 | 252 | 395 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ER | MCF7 | GSE19013 | 11035874 | 11036591 | 717 | 1003 |
| NRSF | Jurkat | GSE13047 | 11035540 | 11037600 | 2060 | 666 |
| NRSF | mAb | Jurkat | 11035193 | 11037047 | 1854 | 1116 |
| NRSF-mono | Jurkat | QuESTdata | 11035596 | 11037751 | 2155 | 562 |
| NRSF-poly | Jurkat | QuESTdata | 11035394 | 11037767 | 2373 | 655 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 11037161 | 11037739 | 578 | 0 |
| CTCF | G2 | GSE9613 | 11042163 | 11042926 | 763 | 0 |
| H3ac | HepG2 | E | 11041238 | 11041522 | 284 | 0 |
| PHF8 | HeLa | GSE20725 | 11041331 | 11043551 | 2220 | 0 |
| TFAP2C | MCF7 | GSE21234 | 11041066 | 11041518 | 452 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7a | hsa-let-7a-1 | 9 | 20835247 |
| hsa-let-7a | hsa-let-7a-2 | 11 | 20835247 |
| hsa-let-7a | hsa-let-7a-3 | 22 | 20835247 |
| hsa-let-7a* | hsa-let-7a-1 | 9 | 20835247 |
| hsa-let-7a* | hsa-let-7a-3 | 22 | 20835247 |
| hsa-let-7b | hsa-let-7b | 22 | 20835247 |
| hsa-let-7b* | hsa-let-7b | 22 | 20835247 |
| hsa-let-7c | hsa-let-7c | 21 | 20835247 |
| hsa-let-7c* | hsa-let-7c | 21 | 20835247 |
| hsa-let-7d | hsa-let-7d | 9 | 20835247 |
| hsa-let-7d* | hsa-let-7d | 9 | 20835247 |
| hsa-let-7e | hsa-let-7e | 19 | 20835247 |
| hsa-let-7e* | hsa-let-7e | 19 | 20835247 |
| hsa-let-7f | hsa-let-7f-1 | 9 | 20835247 |
| hsa-let-7f | hsa-let-7f-2 | X | 20835247 |
| hsa-let-7f-1* | hsa-let-7f-1 | 9 | 20835247 |
| hsa-let-7f-2* | hsa-let-7f-2 | X | 20835247 |
| hsa-let-7g | hsa-let-7g | 3 | 20835247 |
| hsa-let-7g* | hsa-let-7g | 3 | 20835247 |
| hsa-let-7i | hsa-let-7i | 12 | 20835247 |
| hsa-let-7i* | hsa-let-7i | 12 | 20835247 |
| No data |
Cis-Nats regulation