Annotation Detail for SSB
Basic Information Top
| Gene Symbol: | SSB ( LARP3,La ) |
|---|---|
| Gene Full Name: | Sjogren syndrome antigen B (autoantigen La) |
| Band: | 2q31.1 |
| Quick Links | Entrez ID:6741; OMIM: 109090; Uniprot ID:LA_HUMAN; ENSEMBL ID: ENSG00000138385; HGNC ID: 11316 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 116 | N6-acetyllysine. | |
| 128 | N6-acetyllysine. | |
| 328 | N6-acetyllysine. | |
| 360 | N6-acetyllysine. | |
| 362 | Phosphothreonine. | |
| 366 | Phosphoserine; by CK2. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 302 | Phosphothreonine | Phospho.ELM 6.0 |
| 325 | Phosphoserine | Phospho.ELM 6.0 |
| 362 | Phosphothreonine | Phospho.ELM 6.0 |
| 366 | Phosphoserine (by CK2). | Swiss-Prot 53.0 |
| 366 | Phosphoserine (CK2 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 92 | Phosphoserine(CDC2) | HMM predict |
| 92 | Phosphoserine(CDK) | HMM predict |
| 94 | Phosphoserine(PKA) | HMM predict |
| 94 | Phosphoserine(IKK) | HMM predict |
| 366 | Phosphoserine(CK2) | HMM predict |
| 389 | Phosphothreonine(CK2) | HMM predict |
- RefSeq ID: NM_003142
- Location:chr2 170363634-170376814
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Nanog | ES | GSE20650 | 170354390 | 170355150 | 760 | 8865 |
| Oct4 | ES | GSE20650 | 170354453 | 170354988 | 535 | 8914 |
| Oct4 | hES | GSE21916 | 170354428 | 170355113 | 685 | 8864 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3K4me2 | HCT116 | GSE10453 | 170364215 | 170364848 | 633 | 0 |
| H3K4me3 | colorectal | cancer | 170364245 | 170364781 | 536 | 0 |
| H3ac | HepG2 | E | 170364096 | 170364979 | 883 | 0 |
| Oct1 | Hela | GSE14283 | 170372228 | 170372265 | 37 | 0 |
| PHF8 | 293T | GSE20725 | 170363258 | 170364415 | 1157 | 0 |
| PHF8 | HeLa | GSE20725 | 170363271 | 170364230 | 959 | 0 |
| TAF | k562 | GSE8489 | 170364069 | 170364979 | 910 | 0 |
| p130 | Quiescent | GSE19898 | 170363555 | 170363881 | 326 | 0 |
| p130 | shRbSenescent | GSE19898 | 170363589 | 170363826 | 237 | 0 |
| p130 | shRbSenescent | GSE19898 | 170364118 | 170364355 | 237 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15252 | mRNA | SSB | chr2 | 170480895 | 170494082 | 62 | mRNA | METTL5 | chr2 | 170492097 | 170506922 | Sense/Antisense (SA) pairs |