AutismKB 2.0

Annotation Detail for SSR1


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Basic Information Top
Gene Symbol:SSR1 ( DKFZp781N23103,FLJ14232,FLJ22100,FLJ23034,FLJ78242,FLJ93042,TRAPA )
Gene Full Name: signal sequence receptor, alpha
Band: 6p24.3
Quick LinksEntrez ID:6745; OMIM: 600868; Uniprot ID:SSRA_HUMAN; ENSEMBL ID: ENSG00000124783; HGNC ID: 11323
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
136N-linked (GlcNAc...).
191N-linked (GlcNAc...).
247Phosphoserine.
260Phosphothreonine.
268Phosphoserine.
Location(AA) Modifications Resource
136N-linked (GlcNAc...).Swiss-Prot 53.0
191N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
268Phosphoserine.Swiss-Prot 53.0
268PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
36Phosphothreonine(CK2)HMM predict
45Phosphoserine(CK2)HMM predict
74Phosphoserine(CK2)HMM predict
80Phosphoserine(ATM)HMM predict
80PhosphoserineHMM predict
80O-linkedHMM predict
82Phosphoserine(IKK)HMM predict
126SulfotyrosineHMM predict
136N-linkedHMM predict
191N-linkedHMM predict
247Phosphoserine(ATM)HMM predict
273ProlineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003144
  • Location:chr6 7232802-7258433
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 7259194 7259411 217 869
PHF8 HeLaGSE20725 7257749 7259156 1407 19
USF1 HepG2E 7258223 7258876 653 116
USF1 HepG2E 7259194 7259920 726 1124
USF2 HepG2E 7258579 7258876 297 294
USF2 HepG2E 7259194 7259920 726 1124
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 7221198 7221546 348 11431
CTCF CD4SISSRdata 7221198 7221546 348 11431
CTCF G2GSE9613 7216092 7216499 407 16507
CTCF G2GSE9613 7221104 7221488 384 11507
H3ac HepG2E 7217193 7219117 1924 14648
Myc K562GSE19551 7221214 7221570 356 11411
Oct1 H2O2-HelaGSE14283 7223433 7223465 32 9354
RARA MCF7GSE15244 7217193 7219117 1924 14648
RARG MCF7GSE15244 7217193 7219117 1924 14648
Rb GrowingGSE19898 7227601 7227812 211 5096
TAFII hESGSE17917 7221209 7221480 271 11458
hScc1 BcellGSE12603 7221060 7221488 428 11529
hScc1 CdLSGSE12603 7220882 7221488 606 11618
hScc1 G2GSE9613 7220990 7221488 498 11564
p63 keratinocytesGSE17611 7220484 7221434 950 11844
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 7257817 7258694 877 0
H3K4me3 colorectalcancer 7257383 7257920 537 0
H3ac HepG2E 7256457 7257883 1426 0
Oct1 H2O2-HelaGSE14283 7256756 7256796 40 0
Oct1 HelaGSE14283 7251994 7252029 35 0
Oct1 HelaGSE14283 7256759 7256792 33 0
P300 T30-glioblastomaGSE21026 7257381 7259102 1721 0
PHF8 Hs68plusFBSGSE20725 7257460 7258876 1416 0
STAT1 IFNSISSRdata 7256873 7259015 2142 0
hScc1 BcellGSE12603 7258029 7258545 516 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
22096 EST chr6 7221263 7244078 77 mRNA SSR1 chr6 7232802 7258434Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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