AutismKB 2.0

Annotation Detail for SSR2


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Basic Information Top
Gene Symbol:SSR2 ( DKFZp686F19123,TLAP,TRAP-BETA,TRAPB )
Gene Full Name: signal sequence receptor, beta (translocon-associated protein beta)
Band: 1q22
Quick LinksEntrez ID:6746; OMIM: 600867; Uniprot ID:SSRB_HUMAN; ENSEMBL ID: ENSG00000163479; HGNC ID: 11324
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
88N-linked (GlcNAc...).
104N-linked (GlcNAc...).
Location(AA) Modifications Resource
88N-linked (GlcNAc...).Swiss-Prot 53.0
104N-linked (GlcNAc...).Swiss-Prot 53.0
Location(AA) Modification Resource
88N-linkedHMM predict
90O-linkedHMM predict
104N-linkedHMM predict
124O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003145
  • Location:chr1 154245463-154257381
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 154262417 154262688 271 5171
CTCF CD4SISSRdata 154262417 154262688 271 5171
CTCF G2GSE9613 154262586 154262756 170 5290
GABP k562GSE8489 154257304 154257864 560 203
GABP k562GSE8489 154258530 154259014 484 1391
Myc K562GSE19551 154262303 154262732 429 5136
Oct1 HelaGSE14283 154262751 154262791 40 5390
Oct4 hESGSE17917 154262447 154262717 270 5201
TAFII hESGSE17917 154257184 154257636 452 29
TAFII hESGSE17917 154262341 154262708 367 5143
hScc1 BcellGSE12603 154262499 154262756 257 5246
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3ac HepG2E 154237458 154238675 1217 7397
Oct1 HelaGSE14283 154243906 154243946 40 1538
TFAP2C MCF7GSE21234 154237533 154237996 463 7699
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 154256695 154256866 171 0
ETS1 JurkatGSE17954 154256932 154257798 866 0
GABP k562GSE8489 154255481 154255778 297 0
GABP k562GSE8489 154256099 154256833 734 0
H3K4me2 HCT116GSE10453 154256295 154256866 571 0
H3K4me3 colorectalcancer 154256364 154256866 502 0
H3ac HepG2E 154256099 154257411 1312 0
P300 T30-glioblastomaGSE21026 154256536 154257843 1307 0
PHF8 293TGSE20725 154256640 154257690 1050 0
Rb GrowingGSE19898 154257147 154257371 224 0
Rb QuiescentGSE19898 154256912 154257054 142 0
Rb QuiescentGSE19898 154257103 154257275 172 0
Rb SenescentGSE19898 154257170 154257430 260 0
p130 SenescentGSE19898 154257110 154257565 455 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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