Annotation Detail for STRN

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Basic Information Top

Gene Symbol:	STRN ( MGC125642,SG2NA )
Gene Full Name:	striatin, calmodulin binding protein
Band:	2p22.2
Quick Links	Entrez ID:6801; OMIM: NA; Uniprot ID:STRN_HUMAN; ENSEMBL ID: ENSG00000115808; HGNC ID: 11424
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
245	Phosphoserine.
264	Phosphoserine (By similarity).
689	N6-acetyllysine.

Location(AA)	Modifications	Resource
264	Phosphoserine (By similarity).	Swiss-Prot 53.0

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
ETS1	Jurkat	GSE17954	37046898	37047745	847	203
FOXA1	MCF7	GSE15244	37047796	37048683	887	1121
GABP	k562	GSE8489	37047474	37048273	799	755
H3K4me3	colorectal	cancer	37047175	37047688	513	313
Oct1	H2O2-Hela	GSE14283	37047744	37047776	32	642
Oct1	Hela	GSE14283	37047744	37047777	33	642
PHF8	HeLa	GSE20725	37046432	37048130	1698	163
TAF	Hela	GSE8489	37047474	37048647	1173	942
TAF	k562	GSE8489	37047474	37049069	1595	1153
hScc1	Bcell	GSE12603	37047474	37047833	359	535

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
Oct1	Hela	GSE14283	36913972	36914012	40	14985
Oct1	Hela	GSE14283	36917035	36917068	33	11925

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	37046554	37047581	1027
GABP	k562	GSE8489	36949016	36949496	480
H3K4me3	colorectal	cancer	37045713	37046704	991
H3ac	HepG2	E	37045713	37046822	1109
Nanog	ES	GSE20650	37006528	37007436	908
Nanog	hES	GSE18292	37007235	37007453	218
Oct1	H2O2-Hela	GSE14283	37008093	37008132	39
Oct1	H2O2-Hela	GSE14283	37012193	37012244	51
Oct1	Hela	GSE14283	37008093	37008132	39
Oct1	Hela	GSE14283	37012186	37012244	58
Oct1	Hela	GSE14283	37043284	37043320	36
P300	T30-glioblastoma	GSE21026	36970353	36971013	660
RARA	MCF7	GSE15244	37033065	37033706	641
SRF	Hela	GSE8489	36940094	36940640	546
TAF	Hela	GSE8489	37045976	37046554	578
TAF	k562	GSE8489	37045164	37046554	1390
p130	shRbSenescent	GSE19898	37046371	37046902	531

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-let-7b	hsa-let-7b	22	18668040
hsa-let-7b*	hsa-let-7b	22	18668040
hsa-miR-1	hsa-mir-1-2	18	18668040
hsa-miR-1	hsa-mir-1-1	20	18668040
hsa-miR-155	hsa-mir-155	21	18668040
hsa-miR-155*	hsa-mir-155	21	18668040
hsa-miR-16	hsa-mir-16-1	13	18668040
hsa-miR-16	hsa-mir-16-2	3	18668040
hsa-miR-30a	hsa-mir-30a	6	18668040
hsa-miR-30a*	hsa-mir-30a	6	18668040
hsa-miR-30b	hsa-mir-30b	8	18668040
hsa-miR-30b*	hsa-mir-30b	8	18668040
hsa-miR-30c	hsa-mir-30c-2	6	18668040
hsa-miR-30c	hsa-mir-30c-1	1	18668040
hsa-miR-30c-1*	hsa-mir-30c-1	1	18668040
hsa-miR-30c-2*	hsa-mir-30c-2	6	18668040
hsa-miR-30d	hsa-mir-30d	8	18668040
hsa-miR-30d*	hsa-mir-30d	8	18668040
hsa-miR-30e	hsa-mir-30e	1	18668040
hsa-miR-30e*	hsa-mir-30e	1	18668040

ID in Tarbase	Data Type	Support Type	miRNA	Gene	Direct Support	Publication
1284	Unknown	pSILAC	miR-30	STRN	down 50-25%	18668040
Ensembl	Protein Type	Differentially expressed in	Pathology or Event	Mis Regulation	Gene Expression	Tumour Involvement
ENSG00000115808		n_a	n_a	n_a	"lymphocyte, muscle cell"	"tumour, malignant tumour, leukaemia, sarcoma"

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018