AutismKB 2.0

Annotation Detail for STX1A


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Basic Information Top
Gene Symbol:STX1A ( HPC-1,P35-1,STX1,SYN1A )
Gene Full Name: syntaxin 1A (brain)
Band: 7q11.23
Quick LinksEntrez ID:6804; OMIM: 186590; Uniprot ID:STX1A_HUMAN; ENSEMBL ID: ENSG00000106089; HGNC ID: 11433
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
14Phosphoserine.
Location(AA) Modifications Resource
14Phosphoserine.Swiss-Prot 53.0
14Phosphoserine (CK2
188Phosphoserine (DAPK
Location(AA) Modification Resource
14Phosphoserine(CK2)HMM predict
59Phosphoserine(PKG)HMM predict
71Phosphothreonine(CK2)HMM predict
107N-linkedHMM predict
135N-linkedHMM predict
161Phosphothreonine(CK2)HMM predict
225Phosphoserine(ATM)HMM predict
249Phosphoserine(PKG)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004603
  • Location:chr7 72751476-72771923
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 72778019 72778325 306 6249
CTCF CD4SISSRdata 72778019 72778325 306 6249
CTCF HelaGSE12889 72778073 72778345 272 6286
CTCF JurkatGSE12889 72778064 72778337 273 6277
CTCF G2GSE9613 72775131 72775297 166 3291
CTCF G2GSE9613 72777142 72777353 211 5324
CTCF G2GSE9613 72778054 72778422 368 6315
Fos K562GSE19551 72778076 72778462 386 6346
KLF4 hESGSE17917 72771719 72772157 438 15
Myc K562GSE19551 72778064 72778431 367 6324
Oct4 hESGSE17917 72778146 72778458 312 6379
Rb GrowingGSE19898 72778046 72778222 176 6211
STAT1 IFNSISSRdata 72777887 72778610 723 6325
TAFII hESGSE17917 72778041 72778330 289 6262
TFAP2C MCF7GSE21234 72777897 72778282 385 6166
hScc1 BcellGSE12603 72778054 72778422 368 6315
hScc1 CdLSGSE12603 72778054 72778422 368 6315
hScc1 G2GSE9613 72778054 72778422 368 6315
p130 shRbQuiescentGSE19898 72777766 72778268 502 6094
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 72751686 72752516 830 0
CTCF G2GSE9613 72753342 72754295 953 0
CTCF G2GSE9613 72754922 72755598 676 0
CTCF G2GSE9613 72756439 72756811 372 0
CTCF G2GSE9613 72757942 72758452 510 0
CTCF G2GSE9613 72758907 72759230 323 0
CTCF G2GSE9613 72760644 72760952 308 0
CTCF G2GSE9613 72761368 72762587 1219 0
CTCF G2GSE9613 72767716 72768259 543 0
CTCF G2GSE9613 72770176 72772150 1974 0
ER MCF7GSE19013 72758775 72759957 1182 0
Fos K562GSE19551 72758652 72759139 487 0
FoxA1 MCF7MACSdata 72767951 72768205 254 0
Gata2 K562GSE18868 72767759 72768749 990 0
P300 T30-glioblastomaGSE21026 72759261 72759854 593 0
P300 T30-glioblastomaGSE21026 72767668 72768706 1038 0
Rb SenescentGSE19898 72767941 72768425 484 0
TFAP2C MCF7GSE21234 72756556 72757650 1094 0
TFAP2C MCF7GSE21234 72758739 72759969 1230 0
TFAP2C MCF7GSE21234 72767556 72768730 1174 0
hScc1 BcellGSE12603 72753823 72754041 218 0
hScc1 BcellGSE12603 72771295 72772150 855 0
hScc1 CdLSGSE12603 72753823 72754041 218 0
p130 SenescentGSE19898 72767948 72768346 398 0
p130 shRbQuiescentGSE19898 72767838 72768353 515 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
24156 mRNA WBSCR22 chr7 72542587 72564142 269 mRNA STX1A chr7 72558190 72578613Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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