AutismKB 2.0

Annotation Detail for VAMP1


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Basic Information Top
Gene Symbol:VAMP1 ( DKFZp686H12131,SYB1,VAMP-1 )
Gene Full Name: vesicle-associated membrane protein 1 (synaptobrevin 1)
Band: 12p13.31
Quick LinksEntrez ID:6843; OMIM: 185880; Uniprot ID:VAMP1_HUMAN; ENSEMBL ID: ENSG00000139190; HGNC ID: 12642
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
63Phosphoserine (By similarity).
Location(AA) Modifications Resource
63Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
27N-linkedHMM predict
31N-linkedHMM predict
77Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_016830
  • Location:chr12 6441666-6450103
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 6455592 6456613 1021 5999
CTCF G2GSE9613 6457047 6457949 902 7395
Fos K562GSE19551 6449856 6450686 830 168
H3ac HepG2E 6450725 6450889 164 704
NFkBII GM10847GSE19485 6449475 6450949 1474 109
P300 T0-glioblastomaGSE21026 6455627 6456551 924 5986
P300 T30-glioblastomaGSE21026 6449665 6451046 1381 252
P300 T30-glioblastomaGSE21026 6455606 6456528 922 5964
PHF8 293TGSE20725 6449465 6451012 1547 135
PHF8 HeLaGSE20725 6449595 6450983 1388 186
Pol2 GM12878GSE19551 6449665 6450853 1188 156
RARG MCF7GSE15244 6458973 6459517 544 9142
Rb GrowingGSE19898 6450050 6450405 355 124
Rb SenescentGSE19898 6450404 6450888 484 543
hScc1 BcellGSE12603 6449686 6450761 1075 120
hScc1 BcellGSE12603 6457704 6458021 317 7759
hScc1 CdLSGSE12603 6449716 6450646 930 78
hScc1 G2GSE9613 6457047 6457600 553 7220
p130 QuiescentGSE19898 6450507 6450847 340 574
p130 SenescentGSE19898 6450251 6450807 556 426
p130 shRbQuiescentGSE19898 6449856 6450697 841 173
p130 shRbSenescentGSE19898 6449947 6450582 635 161
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 6444939 6445321 382 0
CTCF CD4SISSRdata 6444939 6445321 382 0
CTCF G2GSE9613 6444928 6445405 477 0
CTCF G2GSE9613 6449686 6450423 737 0
H3K4me3 colorectalcancer 6448368 6449716 1348 0
H3ac HepG2E 6448692 6449574 882 0
PHF8 Hs68plusFBSGSE20725 6449616 6450560 944 0
Rb QuiescentGSE19898 6449778 6450131 353 0
hScc1 BcellGSE12603 6444928 6445368 440 0
hScc1 CdLSGSE12603 6444928 6445544 616 0
hScc1 G2GSE9613 6444928 6445297 369 0
p130 QuiescentGSE19898 6449795 6450187 392 0
p130 SenescentGSE19898 6449765 6450194 429 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
5571 mRNA TAPBPL chr12 6431510 6441721 55 mRNA VAMP1 chr12 6441666 6450104Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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