AutismKB 2.0

Annotation Detail for VAMP2


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Basic Information Top
Gene Symbol:VAMP2 ( FLJ11460,SYB2,VAMP-2 )
Gene Full Name: vesicle-associated membrane protein 2 (synaptobrevin 2)
Band: 17p13.1
Quick LinksEntrez ID:6844; OMIM: 185881; Uniprot ID:VAMP2_HUMAN; ENSEMBL ID: ENSG00000220205; HGNC ID: 12643
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylserine (By similarity).
75Phosphoserine (By similarity).
Location(AA) Modifications Resource
2N-acetylserine (By similarity).Swiss-Prot 53.0
75Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
25N-linkedHMM predict
29N-linkedHMM predict
75Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014232
  • Location:chr17 8003188-8007016
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
TFAP2C MCF7GSE21234 8007687 8008829 1142 1242
p130 SenescentGSE19898 8007135 8007476 341 289
p130 shRbQuiescentGSE19898 8007211 8007645 434 412
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF JurkatGSE12889 8002821 8003097 276 230
CTCF G2GSE9613 8000137 8001060 923 2590
CTCF G2GSE9613 8002723 8003097 374 279
ETS1 JurkatGSE17954 8000269 8001341 1072 2384
FOXA1 MCF7GSE15244 7999363 8001060 1697 2977
FoxA1 MCF7MACSdata 8000673 8000952 279 2376
GABP k562GSE8489 7999329 8000300 971 3374
Nanog hESGSE18292 8002617 8002766 149 497
RARG MCF7GSE15244 8002651 8002939 288 394
Rb SenescentGSE19898 8000359 8000908 549 2555
TAF HelaGSE8489 7999329 8000417 1088 3316
TAF k562GSE8489 7999329 8000339 1010 3355
USF1 HepG2E 8000543 8001034 491 2400
hScc1 BcellGSE12603 8000173 8000514 341 2845
hScc1 BcellGSE12603 8000895 8001060 165 2211
hScc1 BcellGSE12603 8002759 8003021 262 299
hScc1 CdLSGSE12603 8000648 8001060 412 2335
hScc1 CdLSGSE12603 8002615 8003427 812 168
p130 shRbQuiescentGSE19898 8000184 8001311 1127 2441
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 8006491 8007372 881 0
H3ac HepG2E 8004034 8006360 2326 0
PHF8 HeLaGSE20725 8006189 8007755 1566 0
hScc1 BcellGSE12603 8006491 8007449 958 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-1 hsa-mir-1-2 18 14697198
hsa-miR-1 hsa-mir-1-1 20 14697198
hsa-miR-101 hsa-mir-101-1 1 14697198
hsa-miR-101 hsa-mir-101-2 9 14697198
hsa-miR-130a hsa-mir-130a 11 14697198
hsa-miR-130a* hsa-mir-130a 11 14697198
hsa-miR-19a hsa-mir-19a 13 14697198
hsa-miR-19a* hsa-mir-19a 13 14697198
hsa-miR-23a hsa-mir-23a 19 14697198
hsa-miR-23a* hsa-mir-23a 19 14697198
hsa-miR-23b hsa-mir-23b 9 14697198
hsa-miR-23b* hsa-mir-23b 9 14697198
hsa-miR-26a hsa-mir-26a-1 3 14697198
hsa-miR-26a hsa-mir-26a-2 12 14697198
hsa-miR-34a hsa-mir-34a 1 14697198
hsa-miR-34a* hsa-mir-34a 1 14697198
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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