AutismKB 2.0

Annotation Detail for SYP


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:SYP ( MRXSYP )
Gene Full Name: synaptophysin
Band: Xp11.23
Quick LinksEntrez ID:6855; OMIM: 313475; Uniprot ID:SYPH_HUMAN; ENSEMBL ID: ENSG00000102003; HGNC ID: 11506
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
59N-linked (GlcNAc...) (Potential).
81Phosphotyrosine (By similarity).
Location(AA) Modifications Resource
59N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
59N-linkedHMM predict
66PhosphoserineHMM predict
66Phosphoserine(CK1)HMM predict
262Phosphotyrosine(INSR)HMM predict
278Phosphotyrosine(INSR)HMM predict
278SulfotyrosineHMM predict
287O-linkedHMM predict
289Phosphotyrosine(INSR)HMM predict
300TyrosineHMM predict
308Phosphoserine(IKK)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003179
  • Location:chrX 48931208-48943604
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 48943434 48943835 401 30
P300 T0-glioblastomaGSE21026 48943478 48944169 691 219
PHF8 HeLaGSE20725 48943314 48944054 740 80
Rb GrowingGSE19898 48943480 48943773 293 22
p130 SenescentGSE19898 48943689 48943988 299 234
p130 shRbQuiescentGSE19898 48943700 48944201 501 346
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF JurkatGSE12889 48936140 48936414 274 0
CTCF G2GSE9613 48930949 48931788 839 0
CTCF G2GSE9613 48934231 48934417 186 0
CTCF G2GSE9613 48936495 48936838 343 0
CTCF G2GSE9613 48942140 48942662 522 0
ETS1 JurkatGSE17954 48934081 48935165 1084 0
KLF4 hESGSE17917 48935181 48935378 197 0
NRSF JurkatGSE13047 48943057 48944016 959 0
NRSF mAbJurkat 48939687 48940381 694 0
NRSF mAbJurkat 48940688 48941393 705 0
NRSF-mono JurkatQuESTdata 48942752 48943881 1129 0
NRSF-poly JurkatQuESTdata 48943009 48943873 864 0
P300 T30-glioblastomaGSE21026 48933996 48935306 1310 0
PHF8 HeLaGSE20725 48934603 48935266 663 0
TFAP2C MCF7GSE21234 48934106 48935121 1015 0
hScc1 BcellGSE12603 48934231 48934417 186 0
hScc1 G2GSE9613 48930906 48931788 882 0
hScc1 G2GSE9613 48934231 48934529 298 0
hScc1 G2GSE9613 48936495 48936693 198 0
hScc1 G2GSE9613 48942113 48942468 355 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
27634 EST chrX 48811795 48815284 66 mRNA SYP chrX 48800635 48813032Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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