Annotation Detail for TARBP1
Basic Information Top
| Gene Symbol: | TARBP1 ( FLJ30482,TRM3,TRP-185,TRP185 ) |
|---|---|
| Gene Full Name: | TAR (HIV-1) RNA binding protein 1 |
| Band: | 1q42.2 |
| Quick Links | Entrez ID:6894; OMIM: 605052; Uniprot ID:TARB1_HUMAN; ENSEMBL ID: ENSG00000059588; HGNC ID: 11568 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 1 | N-acetylmethionine. | |
| 1442 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 11 | Phosphoserine(ATM) | HMM predict |
| 35 | Phosphothreonine(PKC) | HMM predict |
| 77 | Methylarginine | HMM predict |
| 248 | Methylarginine | HMM predict |
| 280 | Phosphothreonine(PKC) | HMM predict |
| 363 | Phosphoserine | HMM predict |
| 363 | Phosphoserine(CK2) | HMM predict |
| 392 | Phosphoserine(CK1) | HMM predict |
| 430 | Phosphoserine(CK1) | HMM predict |
| 433 | O-linked | HMM predict |
| 435 | Phosphoserine(ATM) | HMM predict |
| 435 | Phosphoserine(CDC2) | HMM predict |
| 478 | Phosphothreonine(PKA) | HMM predict |
| 582 | N-linked | HMM predict |
| 589 | Phosphoserine(CDC2) | HMM predict |
| 682 | Phosphotyrosine(SRC) | HMM predict |
| 796 | Phosphoserine(ATM) | HMM predict |
| 848 | N-linked | HMM predict |
| 860 | Phosphoserine(CK1) | HMM predict |
| 870 | Phosphoserine(CK1) | HMM predict |
| 875 | Phosphoserine(CK1) | HMM predict |
| 876 | Phosphoserine(CK1) | HMM predict |
| 877 | Phosphoserine(CK1) | HMM predict |
| 878 | Phosphoserine(ATM) | HMM predict |
| 878 | Phosphoserine(CK1) | HMM predict |
| 1005 | Phosphothreonine(PKC) | HMM predict |
| 1052 | Phosphoserine(IKK) | HMM predict |
| 1055 | Phosphoserine(ATM) | HMM predict |
| 1058 | O-linked | HMM predict |
| 1060 | Phosphoserine(CDC2) | HMM predict |
| 1384 | Phosphothreonine(PKA) | HMM predict |
| 1509 | Phosphoserine(CK2) | HMM predict |
| 1619 | Threonine | HMM predict |
- RefSeq ID: NM_005646
- Location:chr1 232593683-232681471
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 232689354 | 232689701 | 347 | 8056 |
| CTCF | CD4 | SISSRdata | 232689354 | 232689701 | 347 | 8056 |
| CTCF | G2 | GSE9613 | 232689216 | 232689712 | 496 | 7993 |
| CTCF | G2 | GSE9613 | 232696029 | 232696389 | 360 | 14738 |
| RARA | MCF7 | GSE15244 | 232689216 | 232689786 | 570 | 8030 |
| hScc1 | Bcell | GSE12603 | 232689314 | 232689786 | 472 | 8079 |
| hScc1 | CdLS | GSE12603 | 232689216 | 232689786 | 570 | 8030 |
| hScc1 | G2 | GSE9613 | 232689216 | 232689786 | 570 | 8030 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 232595688 | 232595871 | 183 | 0 |
| CTCF | CD4 | GSE12889 | 232611847 | 232612044 | 197 | 0 |
| CTCF | CD4 | SISSRdata | 232595688 | 232595871 | 183 | 0 |
| CTCF | CD4 | SISSRdata | 232611847 | 232612044 | 197 | 0 |
| CTCF | G2 | GSE9613 | 232615903 | 232616114 | 211 | 0 |
| CTCF | G2 | GSE9613 | 232680497 | 232681500 | 1003 | 0 |
| Fos | K562 | GSE19551 | 232635848 | 232636390 | 542 | 0 |
| FoxA1 | MCF7 | MACSdata | 232654912 | 232655188 | 276 | 0 |
| H3K4me3 | colorectal | cancer | 232679865 | 232680391 | 526 | 0 |
| H3ac | HepG2 | E | 232679802 | 232680428 | 626 | 0 |
| KLF4 | hES | GSE17917 | 232602513 | 232602725 | 212 | 0 |
| PHF8 | HeLa | GSE20725 | 232680094 | 232682014 | 1920 | 0 |
| Stat6 | IL-4-hr1 | GSE17850 | 232611030 | 232611904 | 874 | 0 |
| Stat6 | IL-4-hr4 | GSE17850 | 232628248 | 232628797 | 549 | 0 |
| hScc1 | Bcell | GSE12603 | 232595585 | 232595961 | 376 | 0 |
| hScc1 | Bcell | GSE12603 | 232664532 | 232664752 | 220 | 0 |
| hScc1 | Bcell | GSE12603 | 232680543 | 232681648 | 1105 | 0 |
| hScc1 | CdLS | GSE12603 | 232680579 | 232681467 | 888 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-1 | hsa-mir-1-2 | 18 | 15685193 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 15685193 |
| hsa-miR-124 | hsa-mir-124-1 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-2 | 8 | 15685193 |
| hsa-miR-124 | hsa-mir-124-3 | 20 | 15685193 |
| hsa-miR-373 | hsa-mir-373 | 19 | 15685193 |
| hsa-miR-373* | hsa-mir-373 | 19 | 15685193 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 280 | Unknown | MicroArray | miR-124 | TARBP1 | n_a | 15685193 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000059588 | G1-to-S transition | n_a | n_a | "epithelium, lymphocyte, muscle cell" | "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma" |
Cis-Nats regulation