AutismKB 2.0

Annotation Detail for NR2F1


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Basic Information Top
Gene Symbol:NR2F1 ( COUP-TFI,EAR-3,EAR3,ERBAL3,NR2F2,SVP44,TCFCOUP1,TFCOUP1 )
Gene Full Name: nuclear receptor subfamily 2, group F, member 1
Band: 5q15
Quick LinksEntrez ID:7025; OMIM: 132890; Uniprot ID:COT1_HUMAN; ENSEMBL ID: ENSG00000175745; HGNC ID: 7975
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
31MethylarginineHMM predict
46O-linkedHMM predict
51Phosphothreonine(CDC2)HMM predict
51Phosphothreonine(CDK)HMM predict
51Phosphothreonine(MAPK)HMM predict
54Phosphothreonine(MAPK)HMM predict
54Phosphothreonine(CDK)HMM predict
63Phosphothreonine(MAPK)HMM predict
70O-linkedHMM predict
77Phosphoserine(CDK)HMM predict
77O-linkedHMM predict
80Phosphoserine(ATM)HMM predict
117N-linkedHMM predict
158MethylarginineHMM predict
188Phosphotyrosine(INSR)HMM predict
316PhosphoserineHMM predict
319Phosphotyrosine(INSR)HMM predict
319Phosphotyrosine(Jak)HMM predict
348Phosphoserine(IKK)HMM predict
358Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_005654
  • Location:chr5 92944798-92955533
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 92942872 92943094 222 1816
CTCF CD4SISSRdata 92942872 92943094 222 1816
CTCF G2GSE9613 92934432 92934664 232 10251
CTCF G2GSE9613 92940762 92941890 1128 3473
CTCF G2GSE9613 92942501 92943091 590 2003
H3K27me3 colorectalcancer 92939342 92940599 1257 4828
H3K27me3 colorectalcancer 92943687 92944689 1002 611
hScc1 BcellGSE12603 92940946 92941380 434 3636
hScc1 BcellGSE12603 92942361 92943091 730 2073
hScc1 CdLSGSE12603 92940946 92941524 578 3564
hScc1 CdLSGSE12603 92942388 92943091 703 2059
hScc1 G2GSE9613 92942388 92943091 703 2059
p130 QuiescentGSE19898 92940074 92940293 219 4615
p130 shRbQuiescentGSE19898 92939480 92940443 963 4837
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 92956401 92956577 176 956
CTCF G2GSE9613 92957911 92958805 894 2825
TFAP2C MCF7GSE21234 92958594 92959108 514 3318
hScc1 G2GSE9613 92958383 92959023 640 3170
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 92945369 92945610 241 0
CTCF G2GSE9613 92946439 92947245 806 0
CTCF G2GSE9613 92949310 92949889 579 0
CTCF G2GSE9613 92955073 92955512 439 0
hScc1 BcellGSE12603 92945369 92945610 241 0
hScc1 BcellGSE12603 92946439 92947277 838 0
hScc1 BcellGSE12603 92949418 92949785 367 0
hScc1 CdLSGSE12603 92946009 92946797 788 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-125b hsa-mir-125b-1 11 20306291
hsa-miR-125b hsa-mir-125b-1 11 20306291
hsa-miR-125b-1* hsa-mir-125b-1 11 20306291
hsa-miR-125b-1* hsa-mir-125b-1 11 20306291
hsa-miR-302a hsa-mir-302a 4 21151097
hsa-miR-302a hsa-mir-302a 4 21151097
hsa-miR-302a* hsa-mir-302a 4 21151097
hsa-miR-302a* hsa-mir-302a 4 21151097
hsa-miR-302b hsa-mir-302b 4 21151097
hsa-miR-302b hsa-mir-302b 4 21151097
hsa-miR-302b* hsa-mir-302b 4 21151097
hsa-miR-302b* hsa-mir-302b 4 21151097
hsa-miR-302c hsa-mir-302c 4 21151097
hsa-miR-302c hsa-mir-302c 4 21151097
hsa-miR-302c* hsa-mir-302c 4 21151097
hsa-miR-302c* hsa-mir-302c 4 21151097
hsa-miR-302d hsa-mir-302d 4 21151097
hsa-miR-302d hsa-mir-302d 4 21151097
hsa-miR-302d* hsa-mir-302d 4 21151097
hsa-miR-302d* hsa-mir-302d 4 21151097
hsa-miR-302f hsa-mir-302f 0 21151097
hsa-miR-302f hsa-mir-302f 0 21151097
hsa-miR-646 hsa-mir-646 20 20306291
hsa-miR-646 hsa-mir-646 20 20306291
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
21234 mRNA NR2F1 chr5 92944798 92955540 503 EST chr5 92949455 92955406Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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