AutismKB 2.0

Annotation Detail for THBS4


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Basic Information Top
Gene Symbol:THBS4 ( TSP4 )
Gene Full Name: thrombospondin 4
Band: 5q14.1
Quick LinksEntrez ID:7060; OMIM: 600715; Uniprot ID:TSP4_HUMAN; ENSEMBL ID: ENSG00000113296; HGNC ID: 11788
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
564Cell attachment site (Potential).
612N-linked (GlcNAc...) (Potential).
941N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
612N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
941N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
27Phosphothreonine(MAPK)HMM predict
38Phosphoserine(ATM)HMM predict
68Phosphothreonine(PKC)HMM predict
164Phosphoserine(ATM)HMM predict
268Phosphoserine(CDC2)HMM predict
268Phosphoserine(CDK)HMM predict
270Phosphothreonine(MAPK)HMM predict
272O-linkedHMM predict
284O-linkedHMM predict
459Phosphotyrosine(INSR)HMM predict
459Phosphotyrosine(Jak)HMM predict
470SulfotyrosineHMM predict
534Phosphoserine(CK2)HMM predict
612N-linkedHMM predict
618N-linkedHMM predict
696Phosphoserine(CK1)HMM predict
795SulfotyrosineHMM predict
820Phosphotyrosine(SRC)HMM predict
941N-linkedHMM predict
959PhenylalanineHMM predict
961PhenylalanineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003248
  • Location:chr5 79366746-79414860
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Stat6 IL-4-hr4GSE17850 79362595 79363132 537 3883
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 79415174 79415500 326 477
CTCF CD4SISSRdata 79415174 79415500 326 477
CTCF G2GSE9613 79423172 79423532 360 8492
FoxA1 MCF7MACSdata 79415169 79415335 166 392
TAF HelaGSE8489 79424247 79424622 375 9574
hScc1 BcellGSE12603 79423135 79423532 397 8473
hScc1 CdLSGSE12603 79414124 79415633 1509 18
hScc1 CdLSGSE12603 79423135 79423532 397 8473
hScc1 G2GSE9613 79423135 79423532 397 8473
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 79366712 79367136 424 0
CTCF G2GSE9613 79408444 79408946 502 0
CTCF G2GSE9613 79411881 79412133 252 0
CTCF G2GSE9613 79413758 79415417 1659 0
H3K27me3 colorectalcancer 79368112 79368755 643 0
USF1 HepG2E 79412540 79412835 295 0
hScc1 BcellGSE12603 79414088 79415453 1365 0
hScc1 G2GSE9613 79414015 79415528 1513 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
21166 mRNA THBS4 chr5 79366746 79414861 132 EST chr5 79403719 79415233Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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