Annotation Detail for TRAF1
Basic Information Top
| Gene Symbol: | TRAF1 ( EBI6,MGC:10353 ) |
|---|---|
| Gene Full Name: | TNF receptor-associated factor 1 |
| Band: | 9q33.2 |
| Quick Links | Entrez ID:7185; OMIM: 601711; Uniprot ID:TRAF1_HUMAN; ENSEMBL ID: ENSG00000056558; HGNC ID: 12031 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 69 | Phosphoserine (By similarity). | |
| 146 | Phosphoserine (By similarity). | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 5 | Phosphoserine(IKK) | HMM predict |
| 5 | Phosphoserine(ATM) | HMM predict |
| 7 | Phosphoserine(CK1) | HMM predict |
| 8 | Phosphoserine(CDC2) | HMM predict |
| 66 | Phosphoserine(CDC2) | HMM predict |
| 73 | Phosphothreonine(PKC) | HMM predict |
| 100 | Phosphoserine(CDC2) | HMM predict |
| 103 | Phosphoserine(ATM) | HMM predict |
| 111 | Phosphoserine(CK1) | HMM predict |
| 231 | Phosphoserine(CK1) | HMM predict |
| 275 | N-linked | HMM predict |
| 290 | Phosphoserine(CAMK2) | HMM predict |
| 395 | Phosphoserine(CDK) | HMM predict |
- RefSeq ID: NM_005658
- Location:chr9 122704492-122728993
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 122738605 | 122739006 | 401 | 9812 |
| CTCF | CD4 | SISSRdata | 122738605 | 122739006 | 401 | 9812 |
| Myc | K562 | GSE19551 | 122737550 | 122737990 | 440 | 8777 |
| NFkBII | GM12878 | GSE19485 | 122732920 | 122737035 | 4115 | 5984 |
| NFkBII | GM18526 | GSE19485 | 122726411 | 122731957 | 5546 | 191 |
| PHF8 | 293T | GSE20725 | 122730469 | 122731563 | 1094 | 2023 |
| TFAP2C | MCF7 | GSE21234 | 122737363 | 122737808 | 445 | 8592 |
| TFAP2C | MCF7 | GSE21234 | 122738453 | 122739077 | 624 | 9772 |
| hScc1 | Bcell | GSE12603 | 122730663 | 122731557 | 894 | 2117 |
| hScc1 | Bcell | GSE12603 | 122738025 | 122738932 | 907 | 9485 |
| hScc1 | CdLS | GSE12603 | 122738025 | 122739088 | 1063 | 9563 |
| hScc1 | G2 | GSE9613 | 122738416 | 122739088 | 672 | 9759 |
| p130 | shRbQuiescent | GSE19898 | 122733439 | 122733805 | 366 | 4629 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CBP | Jurkat | GSE17954 | 122698499 | 122700152 | 1653 | 5167 |
| Rb | Growing | GSE19898 | 122696469 | 122696694 | 225 | 7911 |
| VDR | GM10855-Unstim | GSE22484 | 122698708 | 122707840 | 9132 | 1219 |
| hScc1 | Bcell | GSE12603 | 122701750 | 122702052 | 302 | 2592 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CBP | T30-glioblastoma | GSE21026 | 122727752 | 122729033 | 1281 | 0 |
| Fos | K562 | GSE19551 | 122728048 | 122728558 | 510 | 0 |
| NFkBII | GM12878 | GSE19485 | 122721144 | 122732244 | 11100 | 0 |
| NFkBII | GM12892 | GSE19485 | 122722386 | 122724610 | 2224 | 0 |
| NFkBII | GM12892 | GSE19485 | 122725534 | 122732296 | 6762 | 0 |
| NRSF | Jurkat | GSE13047 | 122715351 | 122717013 | 1662 | 0 |
| NRSF | mAb | Jurkat | 122713032 | 122714170 | 1138 | 0 |
| NRSF | mAb | Jurkat | 122715234 | 122716977 | 1743 | 0 |
| NRSF | mAb | Jurkat | 122718902 | 122719362 | 460 | 0 |
| NRSF-mono | Jurkat | QuESTdata | 122715262 | 122716584 | 1322 | 0 |
| NRSF-poly | Jurkat | QuESTdata | 122715393 | 122716927 | 1534 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 122708100 | 122708129 | 29 | 0 |
| P300 | T0-glioblastoma | GSE21026 | 122721167 | 122721808 | 641 | 0 |
| Pol2 | GM12878 | GSE19551 | 122726759 | 122730140 | 3381 | 0 |
| TFAP2C | MCF7 | GSE21234 | 122717050 | 122717686 | 636 | 0 |
| hScc1 | Bcell | GSE12603 | 122707280 | 122708098 | 818 | 0 |
Validated miRNA targets