AutismKB 2.0

Annotation Detail for TRPS1


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Basic Information Top
Gene Symbol:TRPS1 ( GC79,LGCR,MGC134928 )
Gene Full Name: trichorhinophalangeal syndrome I
Band: 8q23.3
Quick LinksEntrez ID:7227; OMIM: 604386; Uniprot ID:TRPS1_HUMAN; ENSEMBL ID: ENSG00000104447; HGNC ID: 12340
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
127Phosphoserine.
157Phosphoserine.
178Phosphoserine.
184Phosphoserine.
892Phosphoserine.
978Phosphoserine.
1066Phosphoserine.
1081Phosphoserine.
1085Phosphoserine.
Location(AA) Modifications Resource
127Phosphoserine.Swiss-Prot 53.0
892Phosphoserine.Swiss-Prot 53.0
1080PhosphotyrosinePhospho.ELM 6.0
1081Phosphoserine.Swiss-Prot 53.0
1085Phosphoserine.Swiss-Prot 53.0
1085PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
26Phosphothreonine(PKC)HMM predict
61Phosphoserine(CK1)HMM predict
68Phosphoserine(CK2)HMM predict
71Phosphoserine(CK1)HMM predict
90Phosphoserine(CDK)HMM predict
90Phosphoserine(CDC2)HMM predict
127Phosphoserine(CDK)HMM predict
127Phosphoserine(CDC2)HMM predict
157Phosphoserine(CDC2)HMM predict
198N-linkedHMM predict
216Phosphoserine(MAPK)HMM predict
252N-linkedHMM predict
283N-linkedHMM predict
295N-linkedHMM predict
303N-linkedHMM predict
323Phosphothreonine(PKA)HMM predict
339N-linkedHMM predict
345N-linkedHMM predict
369O-linkedHMM predict
380N-linkedHMM predict
413Phosphotyrosine(Abl)HMM predict
426N-linkedHMM predict
434Phosphotyrosine(Jak)HMM predict
448Phosphoserine(CK1)HMM predict
479Phosphoserine(CAMK2)HMM predict
532Phosphotyrosine(Jak)HMM predict
591N-linkedHMM predict
639Phosphoserine(ATM)HMM predict
659Phosphoserine(CK2)HMM predict
663Phosphoserine(PKG)HMM predict
667Phosphoserine(IKK)HMM predict
692Phosphotyrosine(Jak)HMM predict
706Phosphoserine(CK1)HMM predict
735Phosphothreonine(PKC)HMM predict
791N-linkedHMM predict
876N-linkedHMM predict
892Phosphoserine(PKB)HMM predict
915Phosphotyrosine(INSR)HMM predict
915Phosphotyrosine(Jak)HMM predict
949Phosphothreonine(PKA)HMM predict
949Phosphothreonine(PKC)HMM predict
970Phosphoserine(CK2)HMM predict
976N-linkedHMM predict
978Phosphoserine(CDC2)HMM predict
1002Phosphoserine(CK1)HMM predict
1009Phosphoserine(IKK)HMM predict
1011Phosphothreonine(PKC)HMM predict
1051N-linkedHMM predict
1054Phosphoserine(ATM)HMM predict
1066Phosphoserine(CDC2)HMM predict
1079N-linkedHMM predict
1080Phosphotyrosine(INSR)HMM predict
1081O-linkedHMM predict
1085PhosphoserineHMM predict
1085Phosphoserine(CDK)HMM predict
1085Phosphoserine(CDC2)HMM predict
1209Phosphothreonine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_014112
  • Location:chr8 116489899-116750401
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
H3K4me3 colorectalcancer 116750775 116751278 503 625
KLF4 hESGSE17917 116750479 116750814 335 245
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Nanog ESGSE20650 116479179 116479493 314 10564
Nanog hESGSE18292 116479204 116479452 248 10572
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 116495699 116496327 628 0
FOXA1 MCF7GSE15244 116530788 116531115 327 0
FOXA1 MCF7GSE15244 116700963 116701288 325 0
Fos K562GSE19551 116508777 116509590 813 0
Fos K562GSE19551 116539319 116539756 437 0
Fos K562GSE19551 116657734 116658124 390 0
FoxA1 MCF7MACSdata 116745892 116746061 169 0
GATA3 MCF7GSE15244 116495590 116496287 697 0
Jun K562GSE19551 116657727 116658222 495 0
Myc K562GSE19551 116739613 116739872 259 0
Nanog hESGSE18292 116715862 116716486 624 0
Oct1 H2O2-HelaGSE14283 116646224 116646252 28 0
Oct1 H2O2-HelaGSE14283 116667568 116667600 32 0
Oct1 H2O2-HelaGSE14283 116668430 116668456 26 0
Oct1 H2O2-HelaGSE14283 116729823 116729853 30 0
Oct1 H2O2-HelaGSE14283 116732102 116732135 33 0
Oct1 H2O2-HelaGSE14283 116739211 116739241 30 0
Oct1 HelaGSE14283 116569781 116569846 65 0
Oct1 HelaGSE14283 116628396 116628452 56 0
Oct1 HelaGSE14283 116700727 116700793 66 0
Oct1 HelaGSE14283 116729823 116729852 29 0
Oct1 HelaGSE14283 116739210 116739245 35 0
RARA MCF7GSE15244 116615427 116615940 513 0
RARG MCF7GSE15244 116615427 116615901 474 0
RARG MCF7GSE15244 116700824 116701254 430 0
Rb shRbQuiescentGSE19898 116501705 116501966 261 0
TAF k562GSE8489 116747089 116748904 1815 0
TFAP2C MCF7GSE21234 116547912 116548308 396 0
TFAP2C MCF7GSE21234 116742169 116742454 285 0
hScc1 BcellGSE12603 116491215 116491471 256 0
hScc1 BcellGSE12603 116748544 116749572 1028 0
hScc1 BcellGSE12603 116749964 116750725 761 0
p130 SenescentGSE19898 116533914 116534183 269 0
p130 shRbSenescentGSE19898 116729588 116730019 431 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-200c hsa-mir-200c 12 19229866
hsa-miR-200c* hsa-mir-200c 12 19229866
hsa-miR-302d hsa-mir-302d 4 19229866
hsa-miR-302d* hsa-mir-302d 4 19229866
hsa-miR-367 hsa-mir-367 4 19229866
hsa-miR-367* hsa-mir-367 4 19229866
hsa-miR-372 hsa-mir-372 19 19229866
hsa-miR-373 hsa-mir-373 19 21271679
hsa-miR-373* hsa-mir-373 19 21271679
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
25854 EST chr8 116591004 116592730 1726 mRNA TRPS1 chr8 116489899 116750429 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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