AutismKB 2.0

Annotation Detail for TTF1


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Basic Information Top
Gene Symbol:TTF1 ( - )
Gene Full Name: transcription termination factor, RNA polymerase I
Band: 9q34.13
Quick LinksEntrez ID:7270; OMIM: 600777; Uniprot ID:TTF1_HUMAN; ENSEMBL ID: ENSG00000125482; HGNC ID: 12397
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
41Phosphoserine.
47Phosphoserine.
65Phosphoserine.
240Phosphoserine.
403Phosphoserine.
476Phosphotyrosine.
478Phosphoserine.
481Phosphoserine.
487Phosphoserine.
872Phosphoserine.
Location(AA) Modifications Resource
487Phosphoserine (By similarity).Swiss-Prot 53.0
872Phosphoserine.Swiss-Prot 53.0
872PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
65Phosphoserine(CDK)HMM predict
65Phosphoserine(CDC2)HMM predict
78N-linkedHMM predict
82Phosphothreonine(PKC)HMM predict
92Phosphoserine(PKG)HMM predict
113N-linkedHMM predict
114N-linkedHMM predict
115Phosphothreonine(MAPK)HMM predict
177Phosphoserine(IKK)HMM predict
186Phosphothreonine(PKA)HMM predict
190Phosphoserine(CDK)HMM predict
227Phosphoserine(PKA)HMM predict
231Phosphotyrosine(Syk)HMM predict
297Phosphoserine(ATM)HMM predict
383N-linkedHMM predict
395Phosphothreonine(PKC)HMM predict
395Phosphothreonine(PKA)HMM predict
403Phosphoserine(PKG)HMM predict
408Phosphoserine(ATM)HMM predict
442Phosphothreonine(PKA)HMM predict
445S-palmitoylHMM predict
481PhosphoserineHMM predict
587Phosphoserine(PKA)HMM predict
616Phosphotyrosine(Syk)HMM predict
625Phosphothreonine(CK2)HMM predict
670Phosphoserine(IKK)HMM predict
699Phosphoserine(CK1)HMM predict
710Phosphoserine(CK1)HMM predict
750Phosphothreonine(PKC)HMM predict
767Phosphoserine(PKG)HMM predict
867SulfotyrosineHMM predict
868SulfotyrosineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_007344
  • Location:chr9 134240759-134272041
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 134271808 134272490 682 108
GABP k562GSE8489 134271832 134272697 865 223
GABP k562GSE8489 134273091 134273415 324 1212
KLF4 hESGSE17917 134272531 134272911 380 680
LIN9 SGSE7516 134271832 134272298 466 24
TAFII hESGSE17917 134271911 134272291 380 60
p130 shRbSenescentGSE19898 134271814 134272375 561 53
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
TAF HelaGSE8489 134238538 134238792 254 2095
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP JurkatGSE17954 134269035 134270547 1512 0
GABP k562GSE8489 134269706 134270037 331 0
GABP k562GSE8489 134270728 134271502 774 0
H3K4me2 HCT116GSE10453 134270728 134271502 774 0
H3K4me3 colorectalcancer 134270896 134271502 606 0
H3ac HepG2E 134270765 134271502 737 0
NRSF mAbJurkat 134269262 134270037 775 0
NRSF mAbJurkat 134270728 134271502 774 0
PHF8 293TGSE20725 134271740 134272304 564 0
Rb QuiescentGSE19898 134256903 134257090 187 0
Rb QuiescentGSE19898 134271839 134272236 397 0
Rb shRbSenescenceGSE19898 134271880 134272173 293 0
TAF k562GSE8489 134269868 134270037 169 0
p130 QuiescentGSE19898 134271795 134272270 475 0
p130 SenescentGSE19898 134271761 134272310 549 0
p130 shRbQuiescentGSE19898 134271514 134272393 879 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-221 hsa-mir-221 X 19464057
hsa-miR-221* hsa-mir-221 X 19464057
hsa-miR-222 hsa-mir-222 X 19464057
hsa-miR-222* hsa-mir-222 X 19464057
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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