AutismKB 2.0

Annotation Detail for UBC


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Basic Information Top
Gene Symbol:UBC ( HMG20 )
Gene Full Name: ubiquitin C
Band: 12q24.3
Quick LinksEntrez ID:7316; OMIM: 191340; Uniprot ID:UBC_HUMAN; ENSEMBL ID: ENSG00000150991; HGNC ID: 12468
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
6N6-acetyllysine.
48N6-acetyllysine.
57Phosphoserine (By similarity).
65Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_021009
  • Location:chr12 123962146-123965359
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 123967854 123968032 178 2584
CTCF G2GSE9613 123975555 123975880 325 10358
CTCF G2GSE9613 123978638 123979075 437 13497
FOXA1 MCF7GSE15244 123967109 123968404 1295 2397
FOXA1 MCF7GSE15244 123978233 123980081 1848 13798
H3ac HepG2E 123966730 123967891 1161 1951
H3ac HepG2E 123968140 123968404 264 2913
H3ac HepG2E 123973377 123973676 299 8167
H3ac HepG2E 123974467 123974821 354 9285
H3ac HepG2E 123977916 123978941 1025 13069
HIF1 HypoHepG2 123967598 123967927 329 2403
PHF8 Hs68minusFBSGSE20725 123971701 123972663 962 6823
PHF8 Hs68minusFBSGSE20725 123977588 123978692 1104 12781
PHF8 Hs68plusFBSGSE20725 123971863 123972756 893 6950
PHF8 Hs68plusFBSGSE20725 123977521 123978965 1444 12884
Pol3 GM12878GSE19551 123977519 123978692 1173 12746
Pol3 K562GSE19551 123971864 123972769 905 6957
RARA MCF7GSE15244 123966666 123968404 1738 2176
RARA MCF7GSE15244 123977773 123980081 2308 13568
RARG MCF7GSE15244 123967598 123968404 806 2642
RARG MCF7GSE15244 123978013 123980081 2068 13688
TAF HelaGSE8489 123967079 123967891 812 2126
TAF k562GSE8489 123966032 123967854 1822 1584
TAF k562GSE8489 123968140 123968404 264 2913
TFAP2C MCF7GSE21234 123974484 123975193 709 9479
TFAP2C MCF7GSE21234 123979708 123980306 598 14648
USF2 HepG2E 123967598 123967854 256 2367
VDR GM10855-stimGSE22484 123963209 123973265 10056 2878
hScc1 CdLSGSE12603 123979655 123980081 426 14509
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 123948906 123949297 391 13045
CTCF CD4GSE12889 123957186 123957683 497 4712
CTCF CD4SISSRdata 123948906 123949297 391 13045
CTCF CD4SISSRdata 123957186 123957683 497 4712
CTCF JurkatGSE12889 123948863 123949418 555 13006
CTCF G2GSE9613 123945884 123946176 292 16117
CTCF G2GSE9613 123949017 123949457 440 12910
CTCF G2GSE9613 123955275 123955640 365 6689
CTCF G2GSE9613 123957011 123957850 839 4716
FOXA1 DLD1GSE12801 123957078 123957666 588 4775
FOXA1 MCF7GSE15244 123945672 123946176 504 16223
FOXA1 MCF7GSE15244 123954928 123955446 518 6960
FOXA1 MCF7GSE15244 123957078 123957486 408 4865
Fos K562GSE19551 123955177 123955733 556 6692
Myc K562GSE19551 123955016 123955689 673 6794
NFkBII GM12878GSE19485 123954677 123955926 1249 6845
Oct4 hESGSE17917 123949003 123949208 205 13041
PolII HeLaGSE12783 123958611 123962451 3840 1616
RARA MCF7GSE15244 123945500 123946176 676 16309
RARA MCF7GSE15244 123954928 123955676 748 6845
RARG MCF7GSE15244 123954854 123955494 640 6973
TAFII hESGSE17917 123949037 123949288 251 12984
TFAP2C MCF7GSE21234 123954984 123955639 655 6835
hScc1 BcellGSE12603 123949017 123949457 440 12910
hScc1 BcellGSE12603 123957107 123957850 743 4668
hScc1 CdLSGSE12603 123949017 123949457 440 12910
hScc1 CdLSGSE12603 123956821 123957738 917 4867
hScc1 G2GSE9613 123949017 123949457 440 12910
hScc1 G2GSE9613 123957078 123957703 625 4756
p130 SenescentGSE19898 123955034 123955521 487 6869
p130 shRbSenescentGSE19898 123955211 123955508 297 6787
p63 keratinocytesGSE17611 123955029 123955823 794 6721
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 123964403 123964706 303 0
CTCF CD4SISSRdata 123964403 123964706 303 0
CTCF G2GSE9613 123962258 123962678 420 0
CTCF G2GSE9613 123962999 123965923 2924 0
ETS1 JurkatGSE17954 123964263 123965738 1475 0
FOXA1 MCF7GSE15244 123962258 123965343 3085 0
GATA3 MCF7GSE15244 123962043 123964470 2427 0
H3K4me3 colorectalcancer 123961979 123964960 2981 0
H3ac HepG2E 123961278 123965343 4065 0
PHF8 HeLaGSE20725 123964408 123966071 1663 0
PHF8 Hs68minusFBSGSE20725 123964219 123965462 1243 0
Pol2 GM12878GSE19551 123964080 123966118 2038 0
RARA MCF7GSE15244 123962043 123964795 2752 0
RARG MCF7GSE15244 123961979 123964960 2981 0
TAF HelaGSE8489 123961692 123965343 3651 0
TAF k562GSE8489 123963992 123965282 1290 0
USF2 HepG2E 123964444 123965343 899 0
hScc1 BcellGSE12603 123964329 123965745 1416 0
hScc1 CdLSGSE12603 123964175 123965649 1474 0
hScc1 G2GSE9613 123964547 123965882 1335 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
6780 EST chr12 123921328 123924057 778 mRNA UBC chr12 123921073 123924077Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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