Annotation Detail for VEGFC
Basic Information Top
| Gene Symbol: | VEGFC ( Flt4-L,VRP ) |
|---|---|
| Gene Full Name: | vascular endothelial growth factor C |
| Band: | 4q34.3 |
| Quick Links | Entrez ID:7424; OMIM: 601528; Uniprot ID:VEGFC_HUMAN; ENSEMBL ID: ENSG00000150630; HGNC ID: 12682 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 175 | N-linked (GlcNAc...). | |
| 205 | N-linked (GlcNAc...). | |
| 240 | N-linked (GlcNAc...) (Potential). | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 175 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 205 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 240 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 39 | Phosphoserine(ATM) | HMM predict |
| 51 | Phosphotyrosine(Abl) | HMM predict |
| 162 | S-palmitoyl | HMM predict |
| 175 | N-linked | HMM predict |
| 193 | Phosphoserine(ATM) | HMM predict |
| 205 | N-linked | HMM predict |
| 240 | N-linked | HMM predict |
| 246 | N-linked | HMM predict |
| 365 | Phosphoserine(CDC2) | HMM predict |
- RefSeq ID: NM_005429
- Location:chr4 177841684-177950888
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 177950525 | 177951323 | 798 | 36 |
| H3K27me3 | colorectal | cancer | 177951403 | 177952077 | 674 | 852 |
| KLF4 | hES | GSE17917 | 177950805 | 177951187 | 382 | 108 |
| P300 | T30-glioblastoma | GSE21026 | 177952052 | 177953025 | 973 | 1650 |
| Rb | Senescent | GSE19898 | 177952370 | 177952574 | 204 | 1584 |
| p130 | Senescent | GSE19898 | 177952289 | 177952746 | 457 | 1629 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| NRSF | Jurkat | GSE13047 | 177826537 | 177826814 | 277 | 15009 |
| NRSF | mAb | Jurkat | 177826877 | 177827444 | 567 | 14524 |
| NRSF-mono | Jurkat | QuESTdata | 177826548 | 177826813 | 265 | 15004 |
| NRSF-poly | Jurkat | QuESTdata | 177826459 | 177826751 | 292 | 15080 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 177879625 | 177879799 | 174 | 0 |
| CTCF | G2 | GSE9613 | 177948253 | 177948501 | 248 | 0 |
| NRSF | Jurkat | GSE13047 | 177893477 | 177893799 | 322 | 0 |
| NRSF-mono | Jurkat | QuESTdata | 177893531 | 177893775 | 244 | 0 |
| Nanog | ES | GSE20650 | 177850559 | 177850907 | 348 | 0 |
| SRF | GMO | GSE8489 | 177862073 | 177862453 | 380 | 0 |
| hScc1 | Bcell | GSE12603 | 177950149 | 177951566 | 1417 | 0 |
| p130 | Senescent | GSE19898 | 177927741 | 177928062 | 321 | 0 |
| p130 | shRbSenescent | GSE19898 | 177885163 | 177885412 | 249 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20472 | EST | chr4 | 177965920 | 178002448 | 22609 | mRNA | VEGFC | chr4 | 177979839 | 178089044 | Non-exonic Bidirectional (NOB) pairs | |