AutismKB 2.0

Annotation Detail for VLDLR


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Basic Information Top
Gene Symbol:VLDLR ( CARMQ1,CHRMQ1,FLJ35024,VLDLRCH )
Gene Full Name: very low density lipoprotein receptor
Band: 9p24.2
Quick LinksEntrez ID:7436; OMIM: 192977; Uniprot ID:VLDLR_HUMAN; ENSEMBL ID: ENSG00000147852; HGNC ID: 12698
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
151N-linked (GlcNAc...) (Potential).
765N-linked (GlcNAc...) (Potential).
781N-linked (GlcNAc...) (Potential).
837Endocytosis signal (Potential).
Location(AA) Modifications Resource
151N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
765N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
781N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
16S-palmitoylHMM predict
104Phosphoserine(IKK)HMM predict
142Phosphoserine(CK1)HMM predict
151N-linkedHMM predict
180Phosphoserine(ATM)HMM predict
219Phosphoserine(ATM)HMM predict
225Phosphoserine(CK1)HMM predict
251S-palmitoylHMM predict
461Phosphotyrosine(INSR)HMM predict
572C-linkedHMM predict
717Phosphotyrosine(Jak)HMM predict
733O-linkedHMM predict
751Phosphoserine(IKK)HMM predict
754O-linkedHMM predict
757O-linkedHMM predict
765N-linkedHMM predict
770O-linkedHMM predict
781N-linkedHMM predict
837Phosphotyrosine(Jak)HMM predict
846Phosphoserine(CK1)HMM predict
853Phosphoserine(PKG)HMM predict
867Phosphoserine(CK2)HMM predict
868Phosphothreonine(CK2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001018056
  • Location:chr9 2611792-2644484
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Myc K562GSE19551 2611146 2611652 506 394
TFAP2C MCF7GSE21234 2592623 2593174 551 18894
TFAP2C MCF7GSE21234 2611037 2611582 545 483
hScc1 BcellGSE12603 2611330 2611988 658 134
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
USF1 HepG2E 2613192 2614956 1764 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
26153 mRNA VLDLR chr9 2611802 2644478 738 mRNA FLJ35024 chr9 2525655 2633359Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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