AutismKB 2.0

Annotation Detail for CLIP2


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Basic Information Top
Gene Symbol:CLIP2 ( CLIP,CLIP-115,CYLN2,KIAA0291,MGC11333,WBSCR3,WBSCR4,WSCR3,WSCR4 )
Gene Full Name: CAP-GLY domain containing linker protein 2
Band: 7q11.23
Quick LinksEntrez ID:7461; OMIM: 603432; Uniprot ID:CLIP2_HUMAN; ENSEMBL ID: ENSG00000106665; HGNC ID: 2586
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
49Phosphoserine (By similarity).
202Phosphoserine.
204Phosphoserine.
207Phosphoserine.
211Phosphoserine.
352Phosphoserine (By similarity).
923Phosphoserine.
Location(AA) Modifications Resource
49Phosphoserine (By similarity).Swiss-Prot 53.0
923Phosphoserine.Swiss-Prot 53.0
923PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
27Phosphoserine(IKK)HMM predict
27O-linkedHMM predict
29O-linkedHMM predict
30O-linkedHMM predict
42PhosphoserineHMM predict
48PhosphoserineHMM predict
52O-linkedHMM predict
54O-linkedHMM predict
54Phosphoserine(CDC2)HMM predict
54Phosphoserine(ATM)HMM predict
146O-linkedHMM predict
156Phosphoserine(CK2)HMM predict
156Phosphoserine(ATM)HMM predict
160Phosphoserine(CK1)HMM predict
160Phosphoserine(IKK)HMM predict
163Phosphoserine(CK1)HMM predict
177Phosphothreonine(MAPK)HMM predict
177PhosphothreonineHMM predict
182O-linkedHMM predict
194Phosphoserine(CDC2)HMM predict
200N-linkedHMM predict
205N-linkedHMM predict
211Phosphoserine(CK1)HMM predict
294Phosphoserine(CDK)HMM predict
294PhosphoserineHMM predict
294Phosphoserine(CDC2)HMM predict
314Phosphoserine(ATM)HMM predict
314Phosphoserine(IKK)HMM predict
314Phosphoserine(CDC2)HMM predict
314Phosphoserine(MAPK)HMM predict
316O-linkedHMM predict
317O-linkedHMM predict
319Phosphoserine(IKK)HMM predict
319Phosphoserine(CK1)HMM predict
322Phosphoserine(CK1)HMM predict
335Phosphoserine(PKA)HMM predict
352Phosphoserine(PKG)HMM predict
406Phosphotyrosine(Jak)HMM predict
498Phosphothreonine(PKC)HMM predict
513Phosphothreonine(PKC)HMM predict
551Phosphoserine(PKG)HMM predict
803Phosphoserine(CK1)HMM predict
803Phosphoserine(ATM)HMM predict
815Phosphoserine(CK1)HMM predict
844Phosphoserine(IKK)HMM predict
844Phosphoserine(ATM)HMM predict
854Phosphoserine(PKG)HMM predict
883Phosphothreonine(PKC)HMM predict
923Phosphoserine(MAPK)HMM predict
931Phosphoserine(CK1)HMM predict
965Phosphoserine(CK1)HMM predict
973Phosphoserine(PKA)HMM predict
1023Phosphothreonine(PKC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003388
  • Location:chr7 73341740-73458207
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 73331698 73332613 915 9585
CTCF G2GSE9613 73327653 73327860 207 13984
CTCF G2GSE9613 73335134 73335354 220 6497
Fos K562GSE19551 73331694 73332340 646 9724
Myc K562GSE19551 73331840 73332236 396 9703
NFkBII GM10847GSE19485 73336691 73338050 1359 4370
NFkBII GM12878GSE19485 73336094 73338197 2103 4595
NFkBII GM12892GSE19485 73336518 73338101 1583 4431
NFkBII GM15510GSE19485 73336529 73338225 1696 4364
NFkBII GM18526GSE19485 73323832 73325629 1797 17010
NFkBII GM18526GSE19485 73336789 73338140 1351 4276
Nanog hESGSE18292 73337016 73337171 155 4647
P300 T0-glioblastomaGSE21026 73331681 73332646 965 9577
P300 T30-glioblastomaGSE21026 73324261 73325634 1373 16793
P300 T30-glioblastomaGSE21026 73331382 73332619 1237 9740
hScc1 BcellGSE12603 73327653 73327860 207 13984
hScc1 CdLSGSE12603 73341197 73341799 602 243
hScc1 G2GSE9613 73341197 73342256 1059 14
p130 QuiescentGSE19898 73324674 73325258 584 16775
p130 SenescentGSE19898 73324616 73325394 778 16736
p130 SenescentGSE19898 73341180 73341534 354 384
p130 shRbQuiescentGSE19898 73324624 73325448 824 16705
p130 shRbSenescentGSE19898 73324470 73325232 762 16890
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Oct1 H2O2-HelaGSE14283 73459384 73459416 32 1193
Oct1 HelaGSE14283 73467715 73467795 80 9548
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 73453552 73453872 320 0
CTCF CD4SISSRdata 73453552 73453872 320 0
CTCF HelaGSE12889 73453543 73453917 374 0
CTCF JurkatGSE12889 73453549 73453919 370 0
CTCF G2GSE9613 73341558 73341971 413 0
CTCF G2GSE9613 73343553 73343915 362 0
CTCF G2GSE9613 73345479 73346055 576 0
CTCF G2GSE9613 73351640 73351926 286 0
CTCF G2GSE9613 73354893 73355513 620 0
CTCF G2GSE9613 73357304 73357727 423 0
CTCF G2GSE9613 73377516 73377789 273 0
CTCF G2GSE9613 73390634 73391412 778 0
CTCF G2GSE9613 73394665 73394871 206 0
CTCF G2GSE9613 73395484 73395690 206 0
CTCF G2GSE9613 73396981 73397237 256 0
CTCF G2GSE9613 73406155 73406344 189 0
CTCF G2GSE9613 73407327 73407567 240 0
CTCF G2GSE9613 73409421 73409801 380 0
CTCF G2GSE9613 73414387 73414750 363 0
CTCF G2GSE9613 73417331 73417571 240 0
CTCF G2GSE9613 73426150 73426439 289 0
CTCF G2GSE9613 73428120 73429161 1041 0
CTCF G2GSE9613 73433096 73433350 254 0
CTCF G2GSE9613 73445902 73446474 572 0
CTCF G2GSE9613 73446817 73447389 572 0
CTCF G2GSE9613 73451134 73451493 359 0
CTCF G2GSE9613 73453114 73454002 888 0
CTCF G2GSE9613 73455949 73456308 359 0
CTCF G2GSE9613 73456977 73458503 1526 0
ER E2-MCF7GSE14664 73372890 73372932 42 0
ER E2-MCF7GSE14664 73414979 73415020 41 0
ER E2-MCF7GSE14664 73426286 73426330 44 0
ER Fulvestrant-MCF7GSE14664 73386743 73386779 36 0
ER Fulvestrant-MCF7GSE14664 73426282 73426319 37 0
Fos K562GSE19551 73363575 73363950 375 0
Fos K562GSE19551 73395935 73396545 610 0
Fos K562GSE19551 73417498 73418062 564 0
KLF4 hESGSE17917 73453451 73453825 374 0
Myc K562GSE19551 73399762 73399950 188 0
NRSF JurkatGSE13047 73349899 73350433 534 0
NRSF JurkatSISSRdata 73350004 73350397 393 0
NRSF mAbJurkat 73347531 73347831 300 0
NRSF-mono JurkatQuESTdata 73350003 73350429 426 0
NRSF-poly JurkatQuESTdata 73350019 73350459 440 0
Nanog hESGSE18292 73424054 73424356 302 0
Oct1 H2O2-HelaGSE14283 73363802 73363831 29 0
Oct1 H2O2-HelaGSE14283 73405790 73405822 32 0
Oct1 HelaGSE14283 73363801 73363834 33 0
Oct1 HelaGSE14283 73405790 73405822 32 0
Oct1 HelaGSE14283 73426283 73426325 42 0
P300 T30-glioblastomaGSE21026 73395946 73396680 734 0
PHF8 Hs68minusFBSGSE20725 73341629 73342067 438 0
Rb shRbQuiescentGSE19898 73376778 73376967 189 0
STAT1 IFNSISSRdata 73358941 73359668 727 0
Stat6 IL-4-hr1GSE17850 73405804 73406348 544 0
TAF HelaGSE8489 73417713 73417982 269 0
TAFII hESGSE17917 73417556 73417980 424 0
TFAP2C MCF7GSE21234 73424109 73424611 502 0
USF1 HepG2E 73345049 73346143 1094 0
USF1 HepG2E 73346509 73347186 677 0
USF2 HepG2E 73345049 73346143 1094 0
hScc1 BcellGSE12603 73341197 73342353 1156 0
hScc1 BcellGSE12603 73425173 73425382 209 0
hScc1 BcellGSE12603 73453234 73454002 768 0
hScc1 CdLSGSE12603 73389468 73389620 152 0
hScc1 CdLSGSE12603 73453198 73454002 804 0
hScc1 G2GSE9613 73445902 73446474 572 0
hScc1 G2GSE9613 73446817 73447389 572 0
hScc1 G2GSE9613 73453003 73454002 999 0
hScc1 G2GSE9613 73456977 73458132 1155 0
p63 keratinocytesGSE17611 73364560 73365474 914 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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