AutismKB 2.0

Annotation Detail for WNT5A


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Basic Information Top
Gene Symbol:WNT5A ( hWNT5A )
Gene Full Name: wingless-type MMTV integration site family, member 5A
Band: 3p14.3
Quick LinksEntrez ID:7474; OMIM: 164975; Uniprot ID:WNT5A_HUMAN; ENSEMBL ID: ENSG00000114251; HGNC ID: 12784
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
114N-linked (GlcNAc...) (Potential).
120N-linked (GlcNAc...) (Potential).
312N-linked (GlcNAc...) (Potential).
326N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
99N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
105N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
297N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
311N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
20Phosphoserine(CDK)HMM predict
55Phosphoserine(ATM)HMM predict
61Phosphoserine(ATM)HMM predict
84PhosphothreonineHMM predict
99N-linkedHMM predict
105N-linkedHMM predict
149S-palmitoylHMM predict
278Phosphoserine(IKK)HMM predict
278Phosphoserine(CDC2)HMM predict
302Phosphoserine(CK1)HMM predict
302Phosphoserine(IKK)HMM predict
311N-linkedHMM predict
329Phosphotyrosine(Abl)HMM predict
340S-palmitoylHMM predict
347CysteineHMM predict
348S-palmitoylHMM predict
353LysineHMM predict
356Phosphothreonine(PKA)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_003392
  • Location:chr3 55474783-55496370
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 55496932 55497434 502 813
CTCF G2GSE9613 55497953 55499152 1199 2182
CTCF G2GSE9613 55501940 55502270 330 5735
H3K27me3 colorectalcancer 55498470 55499681 1211 2705
hScc1 BcellGSE12603 55496230 55497987 1757 738
hScc1 BcellGSE12603 55498470 55498990 520 2360
hScc1 CdLSGSE12603 55496230 55497674 1444 582
hScc1 G2GSE9613 55496148 55497526 1378 467
hScc1 G2GSE9613 55498952 55499328 376 2770
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 55458491 55459161 670 15958
FoxA1 MCF7MACSdata 55458624 55458863 239 16040
Oct1 H2O2-HelaGSE14283 55467572 55467602 30 7197
Oct1 HelaGSE14283 55455586 55455614 28 19184
Oct1 HelaGSE14283 55455661 55455689 28 19109
Oct1 HelaGSE14283 55456056 55456112 56 18700
Oct1 HelaGSE14283 55464383 55464429 46 10378
Oct1 HelaGSE14283 55467360 55467387 27 7410
hScc1 BcellGSE12603 55471809 55472086 277 2836
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 55483283 55483729 446 0
CTCF G2GSE9613 55490279 55490633 354 0
CTCF G2GSE9613 55492062 55492248 186 0
CTCF G2GSE9613 55494156 55494743 587 0
CTCF G2GSE9613 55496148 55496399 251 0
H3K27me3 colorectalcancer 55494669 55495192 523 0
Oct1 H2O2-HelaGSE14283 55492107 55492134 27 0
hScc1 BcellGSE12603 55494077 55494743 666 0
hScc1 CdLSGSE12603 55493817 55495412 1595 0
hScc1 G2GSE9613 55490090 55490746 656 0
hScc1 G2GSE9613 55491901 55492372 471 0
hScc1 G2GSE9613 55494112 55495343 1231 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-let-7b hsa-let-7b 22 18668040
hsa-let-7b* hsa-let-7b 22 18668040
hsa-miR-1 hsa-mir-1-2 18 18668040
hsa-miR-1 hsa-mir-1-1 20 18668040
hsa-miR-101 hsa-mir-101-1 1 20676061
hsa-miR-101 hsa-mir-101-2 9 20676061
hsa-miR-10b hsa-mir-10b 2 21241449
hsa-miR-10b* hsa-mir-10b 2 21241449
hsa-miR-130b hsa-mir-130b 22 20676061
hsa-miR-130b* hsa-mir-130b 22 20676061
hsa-miR-140-3p hsa-mir-140 16 20676061
hsa-miR-155 hsa-mir-155 21 18668040
hsa-miR-155* hsa-mir-155 21 18668040
hsa-miR-16 hsa-mir-16-1 13 18668040
hsa-miR-16 hsa-mir-16-2 3 18668040
hsa-miR-23b hsa-mir-23b 9 21241449
hsa-miR-23b* hsa-mir-23b 9 21241449
hsa-miR-29c hsa-mir-29c 1 20676061
hsa-miR-29c* hsa-mir-29c 1 20676061
hsa-miR-30a hsa-mir-30a 6 18668040
hsa-miR-30a* hsa-mir-30a 6 18668040
hsa-miR-30b hsa-mir-30b 8 20676061
hsa-miR-30b hsa-mir-30b 8 18668040
hsa-miR-30b* hsa-mir-30b 8 20676061
hsa-miR-30b* hsa-mir-30b 8 18668040
hsa-miR-30c hsa-mir-30c-2 6 18668040
hsa-miR-30c hsa-mir-30c-1 1 18668040
hsa-miR-30c-1* hsa-mir-30c-1 1 18668040
hsa-miR-30c-2* hsa-mir-30c-2 6 18668040
hsa-miR-30d hsa-mir-30d 8 18668040
hsa-miR-30d* hsa-mir-30d 8 18668040
hsa-miR-30e hsa-mir-30e 1 18668040
hsa-miR-30e* hsa-mir-30e 1 18668040
hsa-miR-452 hsa-mir-452 X 21098571
hsa-miR-452* hsa-mir-452 X 21098571
hsa-miR-516a-3p hsa-mir-516a-1 19 21169410
hsa-miR-516a-3p hsa-mir-516a-2 19 21169410
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
1301 Unknown pSILAC miR-30 WNT5A down 50-25% 18668040
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000114251 n_a n_a n_a "epithelium, lymphocyte, muscle cell" "benign tumour, malignant tumour, carcinoma, sarcoma"
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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