Annotation Detail for XRCC5
Basic Information Top
| Gene Symbol: | XRCC5 ( FLJ39089,KARP-1,KARP1,KU80,KUB2,Ku86,NFIV ) |
|---|---|
| Gene Full Name: | X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining) |
| Band: | 2q35 |
| Quick Links | Entrez ID:7520; OMIM: 194364; Uniprot ID:XRCC5_HUMAN; ENSEMBL ID: ENSG00000079246; HGNC ID: 12833 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 144 | N6-acetyllysine. | |
| 195 | N6-acetyllysine. | |
| 258 | Phosphoserine. | |
| 265 | N6-acetyllysine. | |
| 332 | N6-acetyllysine. | |
| 577 | Phosphoserine; by PRKDC. | |
| 579 | Phosphoserine; by PRKDC (Probable). | |
| 580 | Phosphoserine; by PRKDC. | |
| 660 | N6-acetyllysine. | |
| 665 | N6-acetyllysine. | |
| 715 | Phosphothreonine; by PRKDC (Probable). | |
| 728 | EEXXXDL motif. | |
| Location(AA) | Modifications | Resource |
|---|
| No data |
- RefSeq ID: NM_021141
- Location:chr2 216682376-216779247
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 216681956 | 216682340 | 384 | 229 |
| ETS1 | Jurkat | GSE17954 | 216681635 | 216682874 | 1239 | 122 |
| H3ac | HepG2 | E | 216680607 | 216683792 | 3185 | 177 |
| HIF1 | Hypo | HepG2 | 216681956 | 216682534 | 578 | 132 |
| HIF1 | Norm | HepG2 | 216681956 | 216682609 | 653 | 94 |
| P300 | T30-glioblastoma | GSE21026 | 216681726 | 216682960 | 1234 | 34 |
| PHF8 | 293T | GSE20725 | 216681772 | 216682952 | 1180 | 15 |
| Rb | Growing | GSE19898 | 216681955 | 216682601 | 646 | 99 |
| Rb | Quiescent | GSE19898 | 216682135 | 216682589 | 454 | 15 |
| Rb | shRbSenescence | GSE19898 | 216682050 | 216682433 | 383 | 135 |
| TAF | Hela | GSE8489 | 216681956 | 216682240 | 284 | 279 |
| TFAP2C | MCF7 | GSE21234 | 216680770 | 216681105 | 335 | 1439 |
| TFAP2C | MCF7 | GSE21234 | 216681999 | 216682721 | 722 | 17 |
| p130 | Quiescent | GSE19898 | 216682029 | 216682714 | 685 | 5 |
| p130 | Senescent | GSE19898 | 216682013 | 216682731 | 718 | 5 |
| p130 | shRbSenescent | GSE19898 | 216681943 | 216682753 | 810 | 29 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 216795729 | 216795971 | 242 | 16603 |
| Fos | K562 | GSE19551 | 216790399 | 216790909 | 510 | 11407 |
| NFkBII | GM12878 | GSE19485 | 216795225 | 216796909 | 1684 | 16820 |
| NFkBII | GM12892 | GSE19485 | 216795396 | 216796875 | 1479 | 16888 |
| NFkBII | GM15510 | GSE19485 | 216795366 | 216796882 | 1516 | 16877 |
| NFkBII | GM18526 | GSE19485 | 216795143 | 216796889 | 1746 | 16769 |
| hScc1 | CdLS | GSE12603 | 216795729 | 216796040 | 311 | 16637 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 216687602 | 216687926 | 324 | 0 |
| CTCF | CD4 | GSE12889 | 216712970 | 216713222 | 252 | 0 |
| CTCF | CD4 | SISSRdata | 216687602 | 216687926 | 324 | 0 |
| CTCF | CD4 | SISSRdata | 216712970 | 216713222 | 252 | 0 |
| CTCF | G2 | GSE9613 | 216729825 | 216730151 | 326 | 0 |
| H3K4me3 | colorectal | cancer | 216682240 | 216683647 | 1407 | 0 |
| H3ac | HepG2 | E | 216684917 | 216686286 | 1369 | 0 |
| Myc | hES | GSE17917 | 216682316 | 216682565 | 249 | 0 |
| PHF8 | HeLa | GSE20725 | 216681819 | 216682941 | 1122 | 0 |
| PolII | HeLa | GSE12783 | 216681052 | 216683846 | 2794 | 0 |
| Rb | Quiescent | GSE19898 | 216750114 | 216750224 | 110 | 0 |
| Rb | Senescent | GSE19898 | 216682061 | 216682691 | 630 | 0 |
| p130 | Senescent | GSE19898 | 216715572 | 216715829 | 257 | 0 |
| p130 | shRbQuiescent | GSE19898 | 216681989 | 216682902 | 913 | 0 |
Validated miRNA targets