AutismKB 2.0

Annotation Detail for CSDE1


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Basic Information Top
Gene Symbol:CSDE1 ( D1S155E,DKFZp779B0247,DKFZp779J1455,FLJ26882,RP5-1000E10.3,UNR )
Gene Full Name: cold shock domain containing E1, RNA-binding
Band: 1p13.2
Quick LinksEntrez ID:7812; OMIM: 191510; Uniprot ID:CSDE1_HUMAN; ENSEMBL ID: ENSG00000009307; HGNC ID: 29905
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
81N6-acetyllysine.
116Phosphoserine.
123Phosphoserine.
444Phosphothreonine.
445Phosphoserine.
481Phosphothreonine.
514Phosphoserine.
Location(AA) Modifications Resource
514Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
18N-linkedHMM predict
54Phosphoserine(ATM)HMM predict
116Phosphoserine(IKK)HMM predict
116Phosphoserine(CDC2)HMM predict
123Phosphoserine(CDC2)HMM predict
127Phosphoserine(PKA)HMM predict
445Phosphoserine(CDC2)HMM predict
445Phosphoserine(CDK)HMM predict
482Phosphoserine(ATM)HMM predict
482Phosphoserine(CDK)HMM predict
482Phosphoserine(CDC2)HMM predict
580N-linkedHMM predict
586N-linkedHMM predict
615SulfotyrosineHMM predict
669N-linkedHMM predict
677Phosphothreonine(PKA)HMM predict
677Phosphothreonine(PKC)HMM predict
759N-linkedHMM predict
789ArginineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001007553
  • Location:chr1 115061060-115102146
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 115109199 115109404 205 7155
RARG MCF7GSE15244 115102025 115103170 1145 451
TAF HelaGSE8489 115101751 115103564 1813 511
TAF k562GSE8489 115101873 115103564 1691 572
p130 QuiescentGSE19898 115102203 115102677 474 294
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 115101558 115102543 985 0
ETS1 JurkatGSE17954 115101042 115102994 1952 0
FOXA1 MCF7GSE15244 115099419 115102799 3380 0
H3K4me3 colorectalcancer 115099668 115100126 458 0
H3K4me3 colorectalcancer 115100400 115101520 1120 0
H3ac HepG2E 115099381 115102470 3089 0
LIN9 G0GSE7516 115101181 115101873 692 0
Oct1 H2O2-HelaGSE14283 115075908 115075942 34 0
Oct1 HelaGSE14283 115079771 115079804 33 0
PHF8 293TGSE20725 115101228 115102583 1355 0
PHF8 Hs68minusFBSGSE20725 115101168 115102778 1610 0
RARA MCF7GSE15244 115075637 115075857 220 0
RARA MCF7GSE15244 115099381 115103564 4183 0
hScc1 BcellGSE12603 115101145 115102125 980 0
hScc1 CdLSGSE12603 115101447 115102505 1058 0
p130 QuiescentGSE19898 115101227 115102094 867 0
p130 SenescentGSE19898 115101196 115102904 1708 0
p130 shRbQuiescentGSE19898 115101204 115102594 1390 0
p130 shRbSenescentGSE19898 115101076 115102569 1493 0
Validated miRNA targets Top
No data
ID in Tarbase Data Type Support Type miRNA Gene Direct Support Publication
101 mRNA repression TRUE let-7 NRAS in vitro reporter gene assay (Luciferase) 15766527
Ensembl Protein Type Differentially expressed in Pathology or Event Mis Regulation Gene Expression Tumour Involvement
ENSG00000009307 adult and embryonic CNS n_a n_a "epithelium, squamous cell, lymphocyte, muscle cell, lymphoblast" "benign tumour, malignant tumour, carcinoma, leukaemia, non-Hodgkin's, sarcoma"
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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