Annotation Detail for CXCR4
Basic Information Top
| Gene Symbol: | CXCR4 ( CD184,D2S201E,FB22,HM89,HSY3RR,LAP3,LCR1,LESTR,NPY3R,NPYR,NPYRL,NPYY3R,WHIM ) |
|---|---|
| Gene Full Name: | chemokine (C-X-C motif) receptor 4 |
| Band: | 2q22.1 |
| Quick Links | Entrez ID:7852; OMIM: 162643; Uniprot ID:CXCR4_HUMAN; ENSEMBL ID: ENSG00000121966; HGNC ID: 2561 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 11 | N-linked (GlcNAc...). | |
| 18 | O-linked (Xyl...) (chondroitin sulfate). | |
| 21 | Sulfotyrosine. | |
| 135 | Important for signaling. | |
| 176 | N-linked (GlcNAc...) (Potential). | |
| 319 | Phosphoserine. | |
| 321 | Phosphoserine. | |
| 324 | Phosphoserine; by PKC and GRK6. | |
| 325 | Phosphoserine; by PKC and GRK6. | |
| 330 | Phosphoserine; by GRK6. | |
| 339 | Phosphoserine; by GRK6. | |
| 348 | Phosphoserine. | |
| 351 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 11 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 21 | Sulfotyrosine (Potential). | Swiss-Prot 53.0 |
| 176 | N-linked (GlcNAc...) (Potential). | Swiss-Prot 53.0 |
| 319 | Phosphoserine | Phospho.ELM 6.0 |
| 346 | Phosphoserine | Phospho.ELM 6.0 |
| 348 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 11 | N-linked | HMM predict |
| 12 | Sulfotyrosine | HMM predict |
| 12 | Phosphotyrosine(INSR) | HMM predict |
| 21 | Phosphotyrosine(Syk) | HMM predict |
| 21 | Phosphotyrosine(INSR) | HMM predict |
| 21 | Sulfotyrosine | HMM predict |
| 76 | Phosphotyrosine(Jak) | HMM predict |
| 176 | N-linked | HMM predict |
| 220 | S-palmitoyl | HMM predict |
| 229 | Phosphoserine(CK1) | HMM predict |
| 295 | S-palmitoyl | HMM predict |
| 296 | S-palmitoyl | HMM predict |
| 321 | O-linked | HMM predict |
| 342 | Phosphothreonine(CK2) | HMM predict |
| 344 | Phosphoserine(CK2) | HMM predict |
| 347 | Phosphoserine(CK1) | HMM predict |
| 348 | Phosphoserine(IKK) | HMM predict |
- RefSeq ID: NM_001008540
- Location:chr2 136588389-136590282
- strand:-
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| Oct1 | Hela | GSE14283 | 136575987 | 136576017 | 30 | 12388 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| H3K27me3 | colorectal | cancer | 136588371 | 136589913 | 1542 | 0 |
| PolII | HeLa | GSE12783 | 136586352 | 136592671 | 6319 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-miR-10a | hsa-mir-10a | 17 | 18647411 |
| hsa-miR-10a | hsa-mir-10a | 17 | 18647411 |
| hsa-miR-10a* | hsa-mir-10a | 17 | 18647411 |
| hsa-miR-10a* | hsa-mir-10a | 17 | 18647411 |
| hsa-miR-126 | hsa-mir-126 | 9 | 19996457 |
| hsa-miR-126 | hsa-mir-126 | 9 | 18647411 |
| hsa-miR-126 | hsa-mir-126 | 9 | 19996457 |
| hsa-miR-126 | hsa-mir-126 | 9 | 18647411 |
| hsa-miR-126* | hsa-mir-126 | 9 | 19996457 |
| hsa-miR-126* | hsa-mir-126 | 9 | 18647411 |
| hsa-miR-126* | hsa-mir-126 | 9 | 19996457 |
| hsa-miR-126* | hsa-mir-126 | 9 | 18647411 |
| hsa-miR-142-3p | hsa-mir-142 | 17 | 18647411 |
| hsa-miR-142-3p | hsa-mir-142 | 17 | 18647411 |
| hsa-miR-146a | hsa-mir-146a | 5 | 20023696 |
| hsa-miR-146a | hsa-mir-146a | 5 | 18568019 |
| hsa-miR-146a | hsa-mir-146a | 5 | 20023696 |
| hsa-miR-146a | hsa-mir-146a | 5 | 18568019 |
| hsa-miR-146a* | hsa-mir-146a | 5 | 20023696 |
| hsa-miR-146a* | hsa-mir-146a | 5 | 18568019 |
| hsa-miR-146a* | hsa-mir-146a | 5 | 20023696 |
| hsa-miR-146a* | hsa-mir-146a | 5 | 18568019 |
| hsa-miR-155 | hsa-mir-155 | 21 | 17889832 |
| hsa-miR-155 | hsa-mir-155 | 21 | 17889832 |
| hsa-miR-155* | hsa-mir-155 | 21 | 17889832 |
| hsa-miR-155* | hsa-mir-155 | 21 | 17889832 |
| hsa-miR-17 | hsa-mir-17 | 13 | 18647411 |
| hsa-miR-17 | hsa-mir-17 | 13 | 18647411 |
| hsa-miR-17* | hsa-mir-17 | 13 | 18647411 |
| hsa-miR-17* | hsa-mir-17 | 13 | 18647411 |
| hsa-miR-221 | hsa-mir-221 | X | 18647411 |
| hsa-miR-221 | hsa-mir-221 | X | 18647411 |
| hsa-miR-221* | hsa-mir-221 | X | 18647411 |
| hsa-miR-221* | hsa-mir-221 | X | 18647411 |
| hsa-miR-224 | hsa-mir-224 | X | 20023705 |
| hsa-miR-224 | hsa-mir-224 | X | 20023705 |
| hsa-miR-429 | hsa-mir-429 | 1 | 21233447 |
| hsa-miR-429 | hsa-mir-429 | 1 | 21233447 |
| hsa-miR-92a | hsa-mir-92a-1 | 13 | 18647411 |
| hsa-miR-92a | hsa-mir-92a-2 | X | 18647411 |
| hsa-miR-92a | hsa-mir-92a-1 | 13 | 18647411 |
| hsa-miR-92a | hsa-mir-92a-2 | X | 18647411 |
| No data |
Cis-Nats regulation