AutismKB 2.0

Annotation Detail for LRFN4


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Basic Information Top
Gene Symbol:LRFN4 ( FIGLER6,MGC3103,SALM3,SALM3. )
Gene Full Name: leucine rich repeat and fibronectin type III domain containing 4
Band: 11q13.1
Quick LinksEntrez ID:78999; OMIM: 612810; Uniprot ID:LRFN4_HUMAN; ENSEMBL ID: ENSG00000173621; HGNC ID: 28456
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
25N-linked (GlcNAc...) (Potential).
70N-linked (GlcNAc...) (Potential).
324N-linked (GlcNAc...) (Potential).
333N-linked (GlcNAc...) (Potential).
376N-linked (GlcNAc...) (Potential).
440N-linked (GlcNAc...) (Potential).
626Phosphoserine.
635PDZ-binding.
Location(AA) Modifications Resource
25N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
70N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
324N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
333N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
376N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
440N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
70N-linkedHMM predict
259Phosphoserine(CDC2)HMM predict
299Phosphothreonine(PKC)HMM predict
299Phosphothreonine(PKA)HMM predict
311Phosphothreonine(PKC)HMM predict
324N-linkedHMM predict
333N-linkedHMM predict
349Phosphotyrosine(INSR)HMM predict
376N-linkedHMM predict
440N-linkedHMM predict
441PhosphoserineHMM predict
441Phosphoserine(CK2)HMM predict
442Phosphoserine(CK2)HMM predict
478Phosphoserine(MAPK)HMM predict
484O-linkedHMM predict
565O-linkedHMM predict
565Phosphoserine(CDC2)HMM predict
565Phosphoserine(CDK)HMM predict
567Phosphothreonine(CDC2)HMM predict
567Phosphothreonine(MAPK)HMM predict
567O-linkedHMM predict
575O-linkedHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_024036
  • Location:chr11 66381548-66384520
  • strand:+
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
NRSF pAbJurkat 66382905 66384714 1809 0
PHF8 HeLaGSE20725 66379590 66384324 4734 0
hScc1 BcellGSE12603 66382830 66383999 1169 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4758 mRNA LRFN4 chr11 66381548 66384521 45 EST chr11 66384476 66393005Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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