Annotation Detail for ATG9A
Basic Information Top
| Gene Symbol: | ATG9A ( APG9L1,MGD3208 ) |
|---|---|
| Gene Full Name: | ATG9 autophagy related 9 homolog A (S. cerevisiae) |
| Band: | 2q35 |
| Quick Links | Entrez ID:79065; OMIM: 612204; Uniprot ID:ATG9A_HUMAN; ENSEMBL ID: ENSG00000198925; HGNC ID: 22408 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 14 | Phosphoserine. | |
| 18 | Phosphoserine. | |
| 99 | N-linked (GlcNAc...). | |
| 656 | Phosphoserine. | |
| 735 | Phosphoserine. | |
| 738 | Phosphoserine. | |
| 741 | Phosphoserine. | |
| 828 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 828 | Phosphoserine. | Swiss-Prot 53.0 |
| 828 | Phosphoserine | Phospho.ELM 6.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 8 | Phosphotyrosine(EGFR) | HMM predict |
| 16 | Phosphoserine(ATM) | HMM predict |
| 18 | Phosphoserine(CDC2) | HMM predict |
| 18 | Phosphoserine(ATM) | HMM predict |
| 35 | Phosphoserine | HMM predict |
| 99 | N-linked | HMM predict |
| 101 | Phosphoserine | HMM predict |
| 129 | N-linked | HMM predict |
| 209 | Phosphotyrosine(EGFR) | HMM predict |
| 224 | N-linked | HMM predict |
| 461 | Phosphothreonine(PKC) | HMM predict |
| 493 | S-palmitoyl | HMM predict |
| 507 | N-linked | HMM predict |
| 540 | Phosphothreonine(PKC) | HMM predict |
| 545 | Phosphotyrosine(EGFR) | HMM predict |
| 545 | Phosphotyrosine(SRC) | HMM predict |
| 613 | Phosphoserine(CK1) | HMM predict |
| 656 | Phosphoserine(CDC2) | HMM predict |
| 656 | Phosphoserine(CAMK2) | HMM predict |
| 670 | O-linked | HMM predict |
| 683 | Phosphoserine(IKK) | HMM predict |
| 683 | Phosphoserine(PKB) | HMM predict |
| 686 | Phosphoserine(CK1) | HMM predict |
| 701 | Phosphotyrosine(EGFR) | HMM predict |
| 704 | Phosphothreonine(PKC) | HMM predict |
| 735 | Phosphoserine(PKG) | HMM predict |
| 735 | Phosphoserine(CK1) | HMM predict |
| 735 | Phosphoserine(CK2) | HMM predict |
| 735 | Phosphoserine(PKB) | HMM predict |
| 738 | Phosphoserine(CK1) | HMM predict |
| 738 | Phosphoserine(CK2) | HMM predict |
| 755 | Phosphoserine(IKK) | HMM predict |
| 824 | Proline | HMM predict |
| 828 | Phosphoserine(CK1) | HMM predict |
| 828 | Phosphoserine | HMM predict |
| 828 | Phosphoserine(CK2) | HMM predict |
- RefSeq ID: NM_001077198
- Location:chr2 219792346-219802604
- strand:-
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| TAFII | hES | GSE17917 | 219802183 | 219803037 | 854 | 6 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| LIN9 | G0 | GSE7516 | 219791190 | 219793225 | 2035 | 139 |
| LIN9 | S | GSE7516 | 219791190 | 219793259 | 2069 | 122 |
| p130 | Quiescent | GSE19898 | 219791923 | 219792361 | 438 | 205 |
| p130 | shRbQuiescent | GSE19898 | 219791913 | 219792653 | 740 | 64 |
| p130 | G0 | GSE7516 | 219791118 | 219793225 | 2107 | 175 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 219792335 | 219792693 | 358 | 0 |
| CTCF | G2 | GSE9613 | 219794958 | 219795495 | 537 | 0 |
| CTCF | G2 | GSE9613 | 219796505 | 219797362 | 857 | 0 |
| CTCF | G2 | GSE9613 | 219801964 | 219802580 | 616 | 0 |
| Fos | K562 | GSE19551 | 219802171 | 219803020 | 849 | 0 |
| H3K4me3 | colorectal | cancer | 219800678 | 219801143 | 465 | 0 |
| H3ac | HepG2 | E | 219800491 | 219801933 | 1442 | 0 |
| KLF4 | hES | GSE17917 | 219797722 | 219797911 | 189 | 0 |
| P300 | T0-glioblastoma | GSE21026 | 219802065 | 219803117 | 1052 | 0 |
| PHF8 | HeLa | GSE20725 | 219801708 | 219803467 | 1759 | 0 |
| USF1 | HepG2 | E | 219791669 | 219793944 | 2275 | 0 |
| USF1 | HepG2 | E | 219794503 | 219795314 | 811 | 0 |
| USF1 | HepG2 | E | 219795676 | 219796011 | 335 | 0 |
| USF2 | HepG2 | E | 219791820 | 219793660 | 1840 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7b | hsa-let-7b | 22 | 18668040 |
| hsa-let-7b* | hsa-let-7b | 22 | 18668040 |
| hsa-miR-1 | hsa-mir-1-2 | 18 | 18668040 |
| hsa-miR-1 | hsa-mir-1-1 | 20 | 18668040 |
| hsa-miR-155 | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-155* | hsa-mir-155 | 21 | 18668040 |
| hsa-miR-16 | hsa-mir-16-1 | 13 | 18668040 |
| hsa-miR-16 | hsa-mir-16-2 | 3 | 18668040 |
| hsa-miR-30a | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30a* | hsa-mir-30a | 6 | 18668040 |
| hsa-miR-30b | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30b* | hsa-mir-30b | 8 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30c | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-1* | hsa-mir-30c-1 | 1 | 18668040 |
| hsa-miR-30c-2* | hsa-mir-30c-2 | 6 | 18668040 |
| hsa-miR-30d | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30d* | hsa-mir-30d | 8 | 18668040 |
| hsa-miR-30e | hsa-mir-30e | 1 | 18668040 |
| hsa-miR-30e* | hsa-mir-30e | 1 | 18668040 |
| ID in Tarbase | Data Type | Support Type | miRNA | Gene | Direct Support | Publication |
|---|---|---|---|---|---|---|
| 1030 | Unknown | pSILAC | miR-16 | ATG9A | down 75-50% | 18668040 |
| Ensembl | Protein Type | Differentially expressed in | Pathology or Event | Mis Regulation | Gene Expression | Tumour Involvement |
| ENSG00000198925 | n_a | n_a | n_a | "epithelium, lymphocyte, muscle cell" | "benign tumour, malignant tumour, carcinoma, leukaemia, sarcoma" |
Cis-Nats regulation