Annotation Detail for SNRNP25

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Basic Information Top

Gene Symbol:	SNRNP25 ( C16orf33,FLJ22940 )
Gene Full Name:	small nuclear ribonucleoprotein 25kDa (U11/U12)
Band:	16p13.3
Quick Links	Entrez ID:79622; OMIM: NA; Uniprot ID:SNR25_HUMAN; ENSEMBL ID: ENSG00000161981; HGNC ID: 14161
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	43062	44061	999
Fos	K562	GSE19551	43434	44135	701
H3K4me3	colorectal	cancer	42810	43307	497
H3ac	HepG2	E	42810	43366	556
NFkBII	GM15510	GSE19485	42725	44319	1594
PHF8	293T	GSE20725	42816	44515	1699
PHF8	HeLa	GSE20725	42787	44633	1846
Rb	Growing	GSE19898	43522	43709	187
Rb	Quiescent	GSE19898	43077	43535	458
Rb	Senescent	GSE19898	43550	44051	501
Rb	shRbSenescence	GSE19898	43459	43862	403
TAF	k562	GSE8489	42810	43335	525
hScc1	Bcell	GSE12603	42847	43790	943
hScc1	CdLS	GSE12603	42919	43790	871
p130	Quiescent	GSE19898	42952	43179	227
p130	Quiescent	GSE19898	43499	43792	293
p130	Senescent	GSE19898	43215	44413	1198
p130	shRbQuiescent	GSE19898	43258	43823	565
p130	shRbSenescent	GSE19898	43250	43828	578
p130	shRbSenescent	GSE19898	43896	44015	119
p130	shRbSenescent	GSE19898	44101	44377	276

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
9413	mRNA	C16orf33	chr16	43016	47443	150	mRNA	POLR3K	chr16	36999	43625	Sense/Antisense (SA) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018