AutismKB 2.0

Annotation Detail for SNRNP25


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Basic Information Top
Gene Symbol:SNRNP25 ( C16orf33,FLJ22940 )
Gene Full Name: small nuclear ribonucleoprotein 25kDa (U11/U12)
Band: 16p13.3
Quick LinksEntrez ID:79622; OMIM: NA; Uniprot ID:SNR25_HUMAN; ENSEMBL ID: ENSG00000161981; HGNC ID: 14161
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_024571
  • Location:chr16 43016-47442
  • strand:+
No data
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 43062 44061 999 0
Fos K562GSE19551 43434 44135 701 0
H3K4me3 colorectalcancer 42810 43307 497 0
H3ac HepG2E 42810 43366 556 0
NFkBII GM15510GSE19485 42725 44319 1594 0
PHF8 293TGSE20725 42816 44515 1699 0
PHF8 HeLaGSE20725 42787 44633 1846 0
Rb GrowingGSE19898 43522 43709 187 0
Rb QuiescentGSE19898 43077 43535 458 0
Rb SenescentGSE19898 43550 44051 501 0
Rb shRbSenescenceGSE19898 43459 43862 403 0
TAF k562GSE8489 42810 43335 525 0
hScc1 BcellGSE12603 42847 43790 943 0
hScc1 CdLSGSE12603 42919 43790 871 0
p130 QuiescentGSE19898 42952 43179 227 0
p130 QuiescentGSE19898 43499 43792 293 0
p130 SenescentGSE19898 43215 44413 1198 0
p130 shRbQuiescentGSE19898 43258 43823 565 0
p130 shRbSenescentGSE19898 43250 43828 578 0
p130 shRbSenescentGSE19898 43896 44015 119 0
p130 shRbSenescentGSE19898 44101 44377 276 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
9413 mRNA C16orf33 chr16 43016 47443 150 mRNA POLR3K chr16 36999 43625Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018