Annotation Detail for SMC6
Basic Information Top
| Gene Symbol: | SMC6 ( FLJ22116,FLJ35534,SMC-6,SMC6L1,hSMC6 ) |
|---|---|
| Gene Full Name: | structural maintenance of chromosomes 6 |
| Band: | 2p24.2 |
| Quick Links | Entrez ID:79677; OMIM: 609387; Uniprot ID:SMC6_HUMAN; ENSEMBL ID: ENSG00000163029; HGNC ID: 20466 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 666 | Phosphoserine. | |
| 669 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|
| Location(AA) | Modification | Resource |
|---|---|---|
| 8 | N-linked | HMM predict |
| 10 | Phosphoserine(CK1) | HMM predict |
| 11 | Phosphoserine(CDK) | HMM predict |
| 11 | Phosphoserine(CDC2) | HMM predict |
| 14 | N-linked | HMM predict |
| 78 | N-linked | HMM predict |
| 105 | Phosphoserine(PKA) | HMM predict |
| 162 | Phosphoserine(IKK) | HMM predict |
| 166 | Phosphothreonine(PKC) | HMM predict |
| 223 | Sulfotyrosine | HMM predict |
| 225 | Sulfotyrosine | HMM predict |
| 260 | Phosphoserine(IKK) | HMM predict |
| 325 | Sulfotyrosine | HMM predict |
| 325 | Phosphotyrosine(Syk) | HMM predict |
| 360 | Phosphotyrosine(EGFR) | HMM predict |
| 626 | Phosphoserine(ATM) | HMM predict |
| 669 | Phosphoserine(CK1) | HMM predict |
| 677 | N-linked | HMM predict |
| 720 | N-linked | HMM predict |
| 748 | N-linked | HMM predict |
| 780 | Phosphotyrosine(Syk) | HMM predict |
| 902 | Phosphotyrosine(Jak) | HMM predict |
| 902 | Phosphotyrosine(Syk) | HMM predict |
| 911 | Phosphothreonine(PKC) | HMM predict |
| 930 | Phosphotyrosine(EGFR) | HMM predict |
| 936 | S-palmitoyl | HMM predict |
| 938 | Phosphothreonine(PKC) | HMM predict |
| 964 | N-linked | HMM predict |
| 968 | Phosphoserine(CK1) | HMM predict |
| 970 | Phosphoserine(ATM) | HMM predict |
| 1020 | Phosphotyrosine(INSR) | HMM predict |
| 1020 | Phosphotyrosine(SRC) | HMM predict |
| 1020 | Phosphotyrosine(Syk) | HMM predict |
| 1054 | Phosphoserine(IKK) | HMM predict |
| 1055 | Phosphoserine(CK1) | HMM predict |
- RefSeq ID: NM_024624
- Location:chr2 17708561-17798540
- strand:-
| No data |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 17764387 | 17764583 | 196 | 0 |
| CTCF | CD4 | SISSRdata | 17764387 | 17764583 | 196 | 0 |
| CTCF | G2 | GSE9613 | 17797930 | 17798268 | 338 | 0 |
| ER | E2-MCF7 | GSE14664 | 17746191 | 17746228 | 37 | 0 |
| ER | Fulvestrant-MCF7 | GSE14664 | 17746191 | 17746229 | 38 | 0 |
| GABP | k562 | GSE8489 | 17784682 | 17785276 | 594 | 0 |
| H3K4me3 | colorectal | cancer | 17797287 | 17798114 | 827 | 0 |
| H3ac | HepG2 | E | 17797287 | 17798065 | 778 | 0 |
| Oct1 | H2O2-Hela | GSE14283 | 17732195 | 17732225 | 30 | 0 |
| Oct1 | Hela | GSE14283 | 17709997 | 17710026 | 29 | 0 |
| Oct1 | Hela | GSE14283 | 17732188 | 17732227 | 39 | 0 |
| Oct1 | Hela | GSE14283 | 17745870 | 17745948 | 78 | 0 |
| Oct1 | Hela | GSE14283 | 17746183 | 17746221 | 38 | 0 |
| Oct1 | Hela | GSE14283 | 17788719 | 17788753 | 34 | 0 |
| SRF | Hela | GSE8489 | 17784682 | 17784892 | 210 | 0 |
| TAF | Hela | GSE8489 | 17797287 | 17797966 | 679 | 0 |
| TAF | k562 | GSE8489 | 17784682 | 17785099 | 417 | 0 |
| TAF | k562 | GSE8489 | 17797287 | 17797930 | 643 | 0 |
| hScc1 | Bcell | GSE12603 | 17764317 | 17764695 | 378 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13963 | HTC | chr2 | 17856190 | 17857942 | 168 | mRNA | SMC6L1 | chr2 | 17766708 | 17856688 | Sense/Antisense (SA) pairs | |