AutismKB 2.0

Annotation Detail for GALNT12


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Basic Information Top
Gene Symbol:GALNT12 ( CRCS1,FLJ21212,GalNAc-T12 )
Gene Full Name: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12)
Band: 9q22.33
Quick LinksEntrez ID:79695; OMIM: 610290; Uniprot ID:GLT12_HUMAN; ENSEMBL ID: ENSG00000119514; HGNC ID: 19877
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
55O-linkedHMM predict
55O-linkedHMM predict
55Phosphothreonine(CDC2)HMM predict
55Phosphothreonine(MAPK)HMM predict
492Phosphoserine(ATM)HMM predict
555Phosphoserine(PKG)HMM predict
579ArginineHMM predict
580MethionineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_024642
  • Location:chr9 100609801-100652178
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb GrowingGSE19898 100607398 100607524 126 2341
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T0-glioblastomaGSE21026 100669490 100670221 731 17677
CBP T30-glioblastomaGSE21026 100669780 100670527 747 17975
CTCF HelaGSE12889 100663025 100663317 292 10993
Myc K562GSE19551 100669692 100670278 586 17807
P300 T0-glioblastomaGSE21026 100669523 100670404 881 17785
P300 T30-glioblastomaGSE21026 100669561 100670463 902 17834
STAT1 HeLaGSE12782 100652860 100655669 2809 2086
STAT1 HeLaGSE12783 100652894 100655635 2741 2086
STAT1 HeLaGSE12783 100667563 100670623 3060 16915
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CBP T30-glioblastomaGSE21026 100650362 100651180 818 0
CTCF CD4GSE12889 100650604 100650953 349 0
CTCF CD4SISSRdata 100650604 100650953 349 0
Myc K562GSE19551 100635014 100636125 1111 0
Oct4 hESGSE17917 100650588 100650987 399 0
P300 T0-glioblastomaGSE21026 100650199 100651103 904 0
P300 T30-glioblastomaGSE21026 100650360 100651264 904 0
Rb GrowingGSE19898 100650587 100650821 234 0
Rb SenescentGSE19898 100650677 100650975 298 0
SRF k562GSE8489 100635155 100635905 750 0
TAF k562GSE8489 100635364 100635905 541 0
TFAP2C MCF7GSE21234 100636471 100637071 600 0
hScc1 BcellGSE12603 100650491 100651227 736 0
hScc1 CdLSGSE12603 100650413 100651118 705 0
hScc1 G2GSE9613 100650491 100651190 699 0
p130 SenescentGSE19898 100650341 100650968 627 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
26809 mRNA GALNT12 chr9 98649535 98690929 1866 EST chr9 98689063 98714115 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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