Annotation Detail for C12orf49

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Basic Information Top

Gene Symbol:	C12orf49 ( FLJ21415 )
Gene Full Name:	chromosome 12 open reading frame 49
Band:	12q24.22
Quick Links	Entrez ID:79794; OMIM: NA; Uniprot ID:CL049_HUMAN; ENSEMBL ID: ENSG00000111412; HGNC ID: 26128
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Location(AA)	Modification
67	N-linked (GlcNAc...) (Potential).

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	115659966	115660589	623	52
P300	T0-glioblastoma	GSE21026	115659911	115660766	855	113
P300	T30-glioblastoma	GSE21026	115659632	115660856	1224	19
PHF8	293T	GSE20725	115659607	115660951	1344	54

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	115625497	115625827	330	12317
CTCF	CD4	GSE12889	115631124	115631505	381	6664
CTCF	CD4	SISSRdata	115625497	115625827	330	12317
CTCF	CD4	SISSRdata	115631124	115631505	381	6664
CTCF	Hela	GSE12889	115625480	115625717	237	12380
CTCF	Jurkat	GSE12889	115625469	115625798	329	12345
CTCF	Jurkat	GSE12889	115631172	115631396	224	6695
CTCF	G2	GSE9613	115618494	115619166	672	19149
CTCF	G2	GSE9613	115619620	115620496	876	17921
CTCF	G2	GSE9613	115625071	115625923	852	12482
CTCF	G2	GSE9613	115631084	115632024	940	6425
CTCF	G2	GSE9613	115632903	115633262	359	4896
FOXA1	DLD1	GSE12801	115620163	115620827	664	17484
FOXA1	MCF7	GSE15244	115619907	115620885	978	17583
GATA3	MCF7	GSE15244	115625621	115625923	302	12207
NRSF	pAb	Jurkat	115618989	115619166	177	18901
Oct4	hES	GSE17917	115625516	115625713	197	12364
RARA	MCF7	GSE15244	115619620	115621159	1539	17589
RARA	MCF7	GSE15244	115624924	115625923	999	12555
RARG	MCF7	GSE15244	115619907	115621159	1252	17446
RARG	MCF7	GSE15244	115624999	115625923	924	12518
STAT1	IFN	SISSRdata	115625463	115625839	376	12328
TFAP2C	MCF7	GSE21234	115625452	115625791	339	12357
hScc1	Bcell	GSE12603	115625178	115625923	745	12428
hScc1	Bcell	GSE12603	115631084	115631915	831	6479
hScc1	CdLS	GSE12603	115625035	115625923	888	12500
hScc1	CdLS	GSE12603	115630934	115631602	668	6711
hScc1	G2	GSE9613	115618494	115619166	672	19149
hScc1	G2	GSE9613	115624924	115625923	999	12555
hScc1	G2	GSE9613	115630934	115632065	1131	6479

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	G2	GSE9613	115657257	115657397	140
FOXA1	DLD1	GSE12801	115658379	115658953	574
FOXA1	MCF7	GSE15244	115656603	115657426	823
FOXA1	MCF7	GSE15244	115658308	115658702	394
H3K4me3	colorectal	cancer	115658379	115659270	891
H3ac	HepG2	E	115658379	115659457	1078
RARA	MCF7	GSE15244	115656603	115657397	794
RARA	MCF7	GSE15244	115658308	115658633	325
USF1	HepG2	E	115656603	115657426	823
USF1	HepG2	E	115658308	115659457	1149
USF2	HepG2	E	115656603	115657426	823
USF2	HepG2	E	115658308	115659457	1149
hScc1	Bcell	GSE12603	115659966	115660341	375
p130	Quiescent	GSE19898	115659845	115660084	239

Validated miRNA targets

Micro RNA Name	Stem Loop Name	The chromosome that miRNA located	Publication
hsa-miR-1	hsa-mir-1-2	18	15685193
hsa-miR-1	hsa-mir-1-1	20	15685193
hsa-miR-124	hsa-mir-124-1	8	15685193
hsa-miR-124	hsa-mir-124-2	8	15685193
hsa-miR-124	hsa-mir-124-3	20	15685193
hsa-miR-373	hsa-mir-373	19	15685193
hsa-miR-373*	hsa-mir-373	19	15685193

Cis-Nats regulation

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018