Annotation Detail for TTC21B

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Basic Information Top

Gene Symbol:	TTC21B ( FLJ11457,THM1 )
Gene Full Name:	tetratricopeptide repeat domain 21B
Band:	2q24.3
Quick Links	Entrez ID:79809; OMIM: 612014; Uniprot ID:TT21B_HUMAN; ENSEMBL ID: ENSG00000123607; HGNC ID: 25660
Relate to Another Database:	SFARIGene; denovo-db

Post Translation Modification

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	CD4	GSE12889	166518842	166519173	331	414
CTCF	CD4	SISSRdata	166518842	166519173	331	414
CTCF	G2	GSE9613	166518442	166519093	651	174
Myc	K562	GSE19551	166518412	166519180	768	203
Oct1	Hela	GSE14283	166529328	166529397	69	10769
Rb	Growing	GSE19898	166518761	166519111	350	343
Rb	Quiescent	GSE19898	166518649	166519120	471	291
Rb	Senescent	GSE19898	166518495	166519066	571	187
Rb	shRbQuiescent	GSE19898	166518880	166519043	163	368
Rb	shRbSenescence	GSE19898	166518743	166519085	342	321
p130	Quiescent	GSE19898	166518644	166519107	463	282
p130	Senescent	GSE19898	166518571	166519078	507	231
p130	shRbQuiescent	GSE19898	166518817	166519219	402	425
p130	shRbSenescent	GSE19898	166518724	166519135	411	336

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	166435874	166436087	213	2719
Oct1	Hela	GSE14283	166428873	166428914	41	9806
Oct1	Hela	GSE14283	166436795	166436828	33	1888

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length
CTCF	CD4	GSE12889	166439274	166439580	306
CTCF	CD4	SISSRdata	166439274	166439580	306
ER	E2-MCF7	GSE14664	166496909	166497009	100
ER	E2-MCF7	GSE14664	166497189	166497231	42
ER	E2-MCF7	GSE14664	166497286	166497321	35
ER	Fulvestrant-MCF7	GSE14664	166472810	166472877	67
ER	Fulvestrant-MCF7	GSE14664	166496744	166496850	106
ER	Fulvestrant-MCF7	GSE14664	166497021	166497053	32
FOXA1	MCF7	GSE15244	166517531	166518957	1426
FoxA1	MCF7	MACSdata	166518061	166518272	211
H3K4me3	colorectal	cancer	166517493	166518151	658
Oct1	H2O2-Hela	GSE14283	166479561	166479590	29
Oct1	H2O2-Hela	GSE14283	166480588	166480617	29
Oct1	H2O2-Hela	GSE14283	166481933	166481962	29
Oct1	Hela	GSE14283	166480586	166480616	30
Oct1	Hela	GSE14283	166493147	166493181	34
Oct1	Hela	GSE14283	166514501	166514535	34
PHF8	HeLa	GSE20725	166517976	166518915	939
TAF	k562	GSE8489	166517669	166518120	451
TFAP2C	MCF7	GSE21234	166462968	166463646	678
TFAP2C	MCF7	GSE21234	166464483	166464798	315
TFAP2C	MCF7	GSE21234	166507207	166507634	427
TFAP2C	MCF7	GSE21234	166518023	166518677	654
hScc1	Bcell	GSE12603	166439137	166439459	322
hScc1	CdLS	GSE12603	166439137	166439609	472

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
15224	mRNA		chr2	166615873	166632304	241	mRNA	TTC21B	chr2	166556350	166635855	Sense/Antisense (SA) pairs

Simple Query:

Paper Collected: 6/30/2018

Last Update: 8/26/2018