AutismKB 2.0

Annotation Detail for TMC7


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:TMC7 ( DKFZp781O2274,FLJ21240 )
Gene Full Name: transmembrane channel-like 7
Band: 16p12.3
Quick LinksEntrez ID:79905; OMIM: NA; Uniprot ID:TMC7_HUMAN; ENSEMBL ID: ENSG00000170537; HGNC ID: 23000
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
24N-linked (GlcNAc...) (Potential).
84N-linked (GlcNAc...) (Potential).
96N-linked (GlcNAc...) (Potential).
259N-linked (GlcNAc...) (Potential).
638N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
24N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
84N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
96N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
259N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
638N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
7Phosphoserine(IKK)HMM predict
26Phosphoserine(CK1)HMM predict
34Phosphoserine(CDC2)HMM predict
54Phosphothreonine(PKC)HMM predict
54Phosphothreonine(PKA)HMM predict
55Phosphothreonine(PKC)HMM predict
55Phosphothreonine(PKA)HMM predict
75Phosphoserine(ATM)HMM predict
75Phosphoserine(CK2)HMM predict
84N-linkedHMM predict
86Phosphoserine(CK1)HMM predict
151Phosphoserine(CK1)HMM predict
165Phosphoserine(CDK)HMM predict
198N-linkedHMM predict
259N-linkedHMM predict
279Phosphoserine(CK1)HMM predict
287Phosphoserine(PKG)HMM predict
352Phosphoserine(CK2)HMM predict
352Phosphoserine(CK1)HMM predict
524S-palmitoylHMM predict
569Phosphothreonine(PKC)HMM predict
597Phosphoserine(PKG)HMM predict
638N-linkedHMM predict
711IsoleucineHMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_024847
  • Location:chr16 18902830-18981997
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 18888181 18888418 237 14531
CTCF CD4SISSRdata 18888181 18888418 237 14531
CTCF HelaGSE12889 18888209 18888381 172 14536
CTCF HelaGSE12889 18902528 18902779 251 177
CTCF JurkatGSE12889 18888192 18888458 266 14506
CTCF JurkatGSE12889 18902558 18902831 273 136
CTCF G2GSE9613 18887897 18888421 524 14672
Myc K562GSE19551 18888181 18888404 223 14538
Oct1 H2O2-HelaGSE14283 18890641 18890669 28 12176
Oct1 H2O2-HelaGSE14283 18890751 18890777 26 12067
STAT1 IFNSISSRdata 18888060 18888545 485 14528
hScc1 BcellGSE12603 18887644 18888421 777 14798
hScc1 CdLSGSE12603 18887644 18888421 777 14798
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 18902628 18903034 406 0
CTCF G2GSE9613 18933270 18933569 299 0
FOXA1 MCF7GSE15244 18907903 18908602 699 0
Fos K562GSE19551 18917439 18917928 489 0
H3ac HepG2E 18903103 18903320 217 0
NRSF pAbJurkat 18906442 18906833 391 0
Nanog hESGSE18292 18970368 18970656 288 0
P300 T30-glioblastomaGSE21026 18917260 18918306 1046 0
RARA MCF7GSE15244 18907903 18908602 699 0
TFAP2C MCF7GSE21234 18917426 18918070 644 0
TFAP2C MCF7GSE21234 18926984 18927963 979 0
USF1 HepG2E 18924510 18924855 345 0
USF2 HepG2E 18907903 18908602 699 0
USF2 HepG2E 18924510 18924855 345 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
9681 mRNA TMC7 chr16 18902830 18981998 143 EST chr16 18981149 18986218Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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