AutismKB 2.0

Annotation Detail for CXXC4


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Basic Information Top
Gene Symbol:CXXC4 ( IDAX,MGC149872 )
Gene Full Name: CXXC finger protein 4
Band: 4q24
Quick LinksEntrez ID:80319; OMIM: 611645; Uniprot ID:CXXC4_HUMAN; ENSEMBL ID: ENSG00000168772; HGNC ID: 24593
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_025212
  • Location:chr4 105612793-105631915
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 105632204 105633022 818 698
CTCF G2GSE9613 105635596 105635869 273 3817
NFkBII GM12878GSE19485 105627066 105636938 9872 87
Oct1 H2O2-HelaGSE14283 105637735 105637776 41 5840
Oct1 HelaGSE14283 105637735 105637776 41 5840
Oct1 HelaGSE14283 105645981 105646019 38 14085
hScc1 BcellGSE12603 105632204 105633274 1070 824
hScc1 BcellGSE12603 105635655 105635906 251 3865
No data
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 105631349 105631816 467 0
ER E2-MCF7GSE14664 105621307 105621355 48 0
NFkBII GM12892GSE19485 105629929 105633825 3896 0
Oct1 HelaGSE14283 105629531 105629592 61 0
TFAP2C MCF7GSE21234 105627650 105628020 370 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-1 hsa-mir-1-2 18 16908844
hsa-miR-1 hsa-mir-1-1 20 16908844
No data
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
20038 mRNA chr4 105769725 105976353 96 mRNA CXXC4 chr4 105750948 105770071Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018