Annotation Detail for SSPN
Basic Information Top
| Gene Symbol: | SSPN ( DAGA5,KRAG,NSPN,SPN1,SPN2,nanospan ) |
|---|---|
| Gene Full Name: | sarcospan (Kras oncogene-associated gene) |
| Band: | 12p11.2 |
| Quick Links | Entrez ID:8082; OMIM: 601599; Uniprot ID:SSPN_HUMAN; ENSEMBL ID: ENSG00000123096; HGNC ID: 11322 |
| Relate to Another Database: | SFARIGene; denovo-db |
| No data |
| No data |
| Location(AA) | Modification | Resource |
|---|---|---|
| 12 | Methylarginine | HMM predict |
| 31 | Methyllysine | HMM predict |
| 48 | S-palmitoyl | HMM predict |
| 186 | Phosphoserine(IKK) | HMM predict |
- RefSeq ID: NM_005086
- Location:chr12 26239788-26277133
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 26239530 | 26239979 | 449 | 34 |
| FoxA1 | MCF7 | MACSdata | 26230021 | 26230146 | 125 | 9705 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CBP | T30-glioblastoma | GSE21026 | 26283213 | 26284474 | 1261 | 6710 |
| FOXA1 | DLD1 | GSE12801 | 26290717 | 26291077 | 360 | 13764 |
| FOXA1 | MCF7 | GSE15244 | 26290785 | 26291147 | 362 | 13833 |
| P300 | T30-glioblastoma | GSE21026 | 26282906 | 26284642 | 1736 | 6641 |
| RARA | MCF7 | GSE15244 | 26283843 | 26284445 | 602 | 7011 |
| RARA | MCF7 | GSE15244 | 26290785 | 26291501 | 716 | 14010 |
| RARG | MCF7 | GSE15244 | 26283255 | 26284374 | 1119 | 6681 |
| RARG | MCF7 | GSE15244 | 26290754 | 26291464 | 710 | 13976 |
| TFAP2C | MCF7 | GSE21234 | 26290667 | 26291211 | 544 | 13806 |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | G2 | GSE9613 | 26271022 | 26271163 | 141 | 0 |
| FOXA1 | MCF7 | GSE15244 | 26270235 | 26270548 | 313 | 0 |
| RNAII | Tamoxifen-MCF7 | GSE14664 | 26253505 | 26253544 | 39 | 0 |
| TAF | Hela | GSE8489 | 26264645 | 26264822 | 177 | 0 |
| hScc1 | Bcell | GSE12603 | 26239683 | 26239979 | 296 | 0 |
| hScc1 | Bcell | GSE12603 | 26270992 | 26271256 | 264 | 0 |
Validated miRNA targets| Cluster ID | Plue Type | Plus Gene Name | Plus Chromosome | Plus Start | Plus End | Overlap Length | Minus Type | Minus Gene Name | Minus Chromosome | Minus Star | Minus End | Type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5803 | mRNA | SSPN | chr12 | 26239788 | 26277134 | 364 | EST | chr12 | 26275018 | 26363920 | Sense/Antisense (SA) pairs | |