Annotation Detail for FXR1
Basic Information Top
| Gene Symbol: | FXR1 ( FXR1P ) |
|---|---|
| Gene Full Name: | fragile X mental retardation, autosomal homolog 1 |
| Band: | 3q26.33 |
| Quick Links | Entrez ID:8087; OMIM: 600819; Uniprot ID:FXR1_HUMAN; ENSEMBL ID: ENSG00000114416; HGNC ID: 4023 |
| Relate to Another Database: | SFARIGene; denovo-db |
| Location(AA) | Modification | |
|---|---|---|
| 2 | N-acetylalanine. | |
| 68 | Phosphotyrosine (By similarity). | |
| 406 | Phosphoserine. | |
| 409 | Phosphoserine. | |
| 445 | Omega-N-methylated arginine. | |
| 477 | Phosphotyrosine. | |
| 524 | Phosphoserine. | |
| 528 | Phosphoserine. | |
| 585 | Phosphoserine (By similarity). | |
| 587 | Phosphoserine. | |
| Location(AA) | Modifications | Resource |
|---|---|---|
| 406 | Phosphoserine (By similarity). | Swiss-Prot 53.0 |
| 406 | Phosphoserine | Phospho.ELM 6.0 |
| 409 | Phosphoserine. | Swiss-Prot 53.0 |
| 409 | Phosphoserine | Phospho.ELM 6.0 |
| 445 | Omega-N-methylated arginine. | Swiss-Prot 53.0 |
| 477 | Phosphotyrosine. | Swiss-Prot 53.0 |
| Location(AA) | Modification | Resource |
|---|---|---|
| 60 | Phosphoserine(CK2) | HMM predict |
| 118 | N-linked | HMM predict |
| 124 | N-linked | HMM predict |
| 177 | Phosphothreonine(PKC) | HMM predict |
| 265 | Sulfotyrosine | HMM predict |
| 357 | Phosphotyrosine(Jak) | HMM predict |
| 388 | Methylarginine | HMM predict |
| 394 | N-linked | HMM predict |
| 395 | Phosphotyrosine(INSR) | HMM predict |
| 399 | Phosphotyrosine(INSR) | HMM predict |
| 407 | N-linked | HMM predict |
| 409 | Phosphoserine(CK1) | HMM predict |
| 438 | Phosphoserine(PKC) | HMM predict |
| 445 | Methylarginine | HMM predict |
| 453 | Methylarginine | HMM predict |
| 455 | Methylarginine | HMM predict |
| 459 | Methylarginine | HMM predict |
| 485 | Phosphoserine(CK2) | HMM predict |
| 511 | Phosphothreonine(PKA) | HMM predict |
| 528 | Phosphoserine(IKK) | HMM predict |
| 536 | Phosphothreonine(PKC) | HMM predict |
| 546 | Phosphoserine(CK1) | HMM predict |
| 546 | Phosphoserine(PKG) | HMM predict |
| 546 | Phosphoserine(IKK) | HMM predict |
| 597 | Phosphothreonine(MAPK) | HMM predict |
| 605 | Phosphothreonine(PKC) | HMM predict |
- RefSeq ID: NM_001013438
- Location:chr3 182113145-182177641
- strand:+
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| CTCF | CD4 | GSE12889 | 182112714 | 182113017 | 303 | 280 |
| CTCF | CD4 | SISSRdata | 182112714 | 182113017 | 303 | 280 |
| CTCF | G2 | GSE9613 | 182112663 | 182113223 | 560 | 203 |
| ER | MCF7 | GSE19013 | 182112557 | 182113240 | 683 | 247 |
| FOXA1 | MCF7 | GSE15244 | 182112663 | 182113343 | 680 | 143 |
| hScc1 | Bcell | GSE12603 | 182112766 | 182113343 | 577 | 91 |
| p130 | shRbSenescent | GSE19898 | 182112568 | 182113586 | 1018 | 69 |
| No data |
| Transcrip Factors | Experimental Cell | Database | TF Binding Start | TF Binding End | TF Binding Length | The Distance to Gene |
|---|---|---|---|---|---|---|
| ER | MCF7 | GSE19013 | 182122924 | 182123721 | 797 | 0 |
| H3K4me3 | colorectal | cancer | 182113708 | 182114801 | 1093 | 0 |
| H3ac | HepG2 | E | 182112342 | 182115265 | 2923 | 0 |
| P300 | T0-glioblastoma | GSE21026 | 182112687 | 182113611 | 924 | 0 |
| P300 | T30-glioblastoma | GSE21026 | 182112566 | 182113859 | 1293 | 0 |
| PHF8 | 293T | GSE20725 | 182112669 | 182113694 | 1025 | 0 |
| PHF8 | HeLa | GSE20725 | 182112506 | 182113804 | 1298 | 0 |
| Rb | Senescent | GSE19898 | 182112746 | 182113544 | 798 | 0 |
| TAF | k562 | GSE8489 | 182113810 | 182114946 | 1136 | 0 |
| USF1 | HepG2 | E | 182114121 | 182114767 | 646 | 0 |
| hScc1 | CdLS | GSE12603 | 182112663 | 182113734 | 1071 | 0 |
| p130 | Quiescent | GSE19898 | 182113156 | 182113394 | 238 | 0 |
| p130 | Senescent | GSE19898 | 182113011 | 182113788 | 777 | 0 |
| p130 | shRbQuiescent | GSE19898 | 182113098 | 182113732 | 634 | 0 |
| Micro RNA Name | Stem Loop Name | The chromosome that miRNA located | Publication |
|---|---|---|---|
| hsa-let-7a | hsa-let-7a-1 | 9 | 18048652 |
| hsa-let-7a | hsa-let-7a-2 | 11 | 18048652 |
| hsa-let-7a | hsa-let-7a-3 | 22 | 18048652 |
| hsa-let-7a* | hsa-let-7a-1 | 9 | 18048652 |
| hsa-let-7a* | hsa-let-7a-3 | 22 | 18048652 |
| hsa-let-7b | hsa-let-7b | 22 | 18048652 |
| hsa-let-7b* | hsa-let-7b | 22 | 18048652 |
| hsa-let-7c | hsa-let-7c | 21 | 18048652 |
| hsa-let-7c* | hsa-let-7c | 21 | 18048652 |
| hsa-let-7d | hsa-let-7d | 9 | 18048652 |
| hsa-let-7d* | hsa-let-7d | 9 | 18048652 |
| hsa-let-7e | hsa-let-7e | 19 | 18048652 |
| hsa-let-7e* | hsa-let-7e | 19 | 18048652 |
| hsa-let-7f | hsa-let-7f-1 | 9 | 18048652 |
| hsa-let-7f | hsa-let-7f-2 | X | 18048652 |
| hsa-let-7f-1* | hsa-let-7f-1 | 9 | 18048652 |
| hsa-let-7f-2* | hsa-let-7f-2 | X | 18048652 |
| hsa-let-7g | hsa-let-7g | 3 | 18048652 |
| hsa-let-7g* | hsa-let-7g | 3 | 18048652 |
| hsa-let-7i | hsa-let-7i | 12 | 18048652 |
| hsa-let-7i* | hsa-let-7i | 12 | 18048652 |
| hsa-miR-130a | hsa-mir-130a | 11 | 20197067 |
| hsa-miR-130a* | hsa-mir-130a | 11 | 20197067 |
| hsa-miR-196a | hsa-mir-196a-1 | 17 | 20197067 |
| hsa-miR-196a | hsa-mir-196a-2 | 12 | 20197067 |
| hsa-miR-200b | hsa-mir-200b | 1 | 20197067 |
| hsa-miR-200b* | hsa-mir-200b | 1 | 20197067 |
| hsa-miR-32 | hsa-mir-32 | 9 | 20519410 |
| hsa-miR-32* | hsa-mir-32 | 9 | 20519410 |
| hsa-miR-363 | hsa-mir-363 | X | 20519410 |
| hsa-miR-363* | hsa-mir-363 | X | 20519410 |
| hsa-miR-367 | hsa-mir-367 | 4 | 20519410 |
| hsa-miR-367* | hsa-mir-367 | 4 | 20519410 |
| hsa-miR-369-3p | hsa-mir-369 | 14 | 18048652 |
| hsa-miR-369-5p | hsa-mir-369 | 14 | 18048652 |
| hsa-miR-96 | hsa-mir-96 | 7 | 20197067 |
| hsa-miR-96* | hsa-mir-96 | 7 | 20197067 |
| No data |
Cis-Nats regulation