AutismKB 2.0

Annotation Detail for GDPD5


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Basic Information Top
Gene Symbol:GDPD5 ( GDE2,PP1665 )
Gene Full Name: glycerophosphodiester phosphodiesterase domain containing 5
Band: 11q13.4-q13.5
Quick LinksEntrez ID:81544; OMIM: 609632; Uniprot ID:GDPD5_HUMAN; ENSEMBL ID: ENSG00000158555; HGNC ID: 28804
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
301N-linked (GlcNAc...) (Potential).
336N-linked (GlcNAc...) (Potential).
352N-linked (GlcNAc...) (Potential).
374N-linked (GlcNAc...) (Potential).
448N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
301N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
336N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
352N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
374N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
448N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
9SulfotyrosineHMM predict
10Phosphotyrosine(Syk)HMM predict
38Phosphothreonine(CDC2)HMM predict
69Phosphotyrosine(Syk)HMM predict
69Phosphotyrosine(EGFR)HMM predict
83C-linkedHMM predict
93O-linkedHMM predict
94O-linkedHMM predict
191Phosphoserine(ATM)HMM predict
191Phosphoserine(CK1)HMM predict
283Phosphothreonine(PKA)HMM predict
301N-linkedHMM predict
327Phosphoserine(ATM)HMM predict
336N-linkedHMM predict
338Phosphoserine(IKK)HMM predict
352N-linkedHMM predict
358N-linkedHMM predict
374N-linkedHMM predict
474O-linkedHMM predict
475Phosphoserine(CK1)HMM predict
482Phosphoserine(ATM)HMM predict
486Phosphoserine(CDC2)HMM predict
542Phosphothreonine(PKC)HMM predict
576Phosphotyrosine(Syk)HMM predict
581N-linkedHMM predict
583O-linkedHMM predict
585Phosphothreonine(CDC2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_030792
  • Location:chr11 74823333-74914514
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 74914465 74914892 427 164
CTCF CD4GSE12889 74921125 74921423 298 6760
CTCF CD4SISSRdata 74914465 74914892 427 164
CTCF CD4SISSRdata 74921125 74921423 298 6760
H3ac HepG2E 74916154 74916487 333 1806
NRSF pAbJurkat 74914761 74915146 385 439
NRSF pAbJurkat 74919935 74920535 600 5721
NRSF pAbJurkat 74928019 74928311 292 13651
Oct1 HelaGSE14283 74917332 74917397 65 2850
PHF8 293TGSE20725 74914343 74915227 884 271
PolII HeLaGSE12783 74925635 74927555 1920 12081
TAF HelaGSE8489 74925976 74927385 1409 12166
hScc1 BcellGSE12603 74920881 74921249 368 6551
hScc1 CdLSGSE12603 74920881 74921249 368 6551
hScc1 G2GSE9613 74920881 74921249 368 6551
p130 SenescentGSE19898 74914733 74915173 440 439
p130 shRbSenescentGSE19898 74914697 74914892 195 280
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
Rb QuiescentGSE19898 74821091 74821219 128 2179
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 74834052 74834333 281 0
CTCF CD4GSE12889 74840299 74840494 195 0
CTCF CD4SISSRdata 74834052 74834333 281 0
CTCF CD4SISSRdata 74840299 74840494 195 0
FOXA1 DLD1GSE12801 74887946 74888801 855 0
FOXA1 MCF7GSE15244 74864728 74864956 228 0
FOXA1 MCF7GSE15244 74884515 74884978 463 0
FOXA1 MCF7GSE15244 74901994 74902526 532 0
GATA3 MCF7GSE15244 74902261 74903359 1098 0
H3ac HepG2E 74909180 74911211 2031 0
H3ac HepG2E 74911589 74913852 2263 0
Myc K562GSE19551 74834027 74834370 343 0
NFkBII GM12878GSE19485 74911771 74913634 1863 0
NFkBII GM12892GSE19485 74911595 74913678 2083 0
NRSF pAbJurkat 74824355 74824847 492 0
NRSF pAbJurkat 74837791 74838689 898 0
NRSF pAbJurkat 74852528 74852852 324 0
NRSF pAbJurkat 74875179 74875748 569 0
NRSF pAbJurkat 74903920 74904378 458 0
NRSF pAbJurkat 74908917 74909978 1061 0
NRSF pAbJurkat 74911028 74911211 183 0
Oct1 H2O2-HelaGSE14283 74875098 74875127 29 0
Oct1 H2O2-HelaGSE14283 74914467 74914495 28 0
Oct1 HelaGSE14283 74836844 74836884 40 0
Oct1 HelaGSE14283 74844737 74844769 32 0
Oct1 HelaGSE14283 74846498 74846534 36 0
Oct1 HelaGSE14283 74875098 74875129 31 0
Oct1 HelaGSE14283 74878488 74878529 41 0
Oct1 HelaGSE14283 74878843 74878882 39 0
Oct1 HelaGSE14283 74892767 74892803 36 0
Oct1 HelaGSE14283 74893170 74893215 45 0
Oct1 HelaGSE14283 74897423 74897456 33 0
Oct1 HelaGSE14283 74914463 74914500 37 0
P300 T30-glioblastomaGSE21026 74887624 74888751 1127 0
RARA MCF7GSE15244 74864728 74864956 228 0
RARA MCF7GSE15244 74884515 74885170 655 0
RARA MCF7GSE15244 74887946 74888765 819 0
RARA MCF7GSE15244 74896821 74897821 1000 0
RARA MCF7GSE15244 74901629 74902454 825 0
RARG MCF7GSE15244 74844696 74845693 997 0
RARG MCF7GSE15244 74852262 74852852 590 0
RARG MCF7GSE15244 74887946 74888834 888 0
RARG MCF7GSE15244 74896533 74897279 746 0
RARG MCF7GSE15244 74901994 74902526 532 0
RNAII Tamoxifen-MCF7GSE14664 74875096 74875131 35 0
RNAII Tamoxifen-MCF7GSE14664 74897420 74897465 45 0
Rb GrowingGSE19898 74904044 74904227 183 0
TAFII hESGSE17917 74834114 74834515 401 0
TFAP2C MCF7GSE21234 74838877 74839340 463 0
TFAP2C MCF7GSE21234 74845234 74845895 661 0
TFAP2C MCF7GSE21234 74850984 74852042 1058 0
TFAP2C MCF7GSE21234 74879127 74879756 629 0
TFAP2C MCF7GSE21234 74896933 74897461 528 0
hScc1 BcellGSE12603 74834168 74834928 760 0
hScc1 BcellGSE12603 74839943 74840512 569 0
hScc1 BcellGSE12603 74853115 74853709 594 0
hScc1 BcellGSE12603 74889132 74889463 331 0
hScc1 BcellGSE12603 74913852 74914363 511 0
hScc1 CdLSGSE12603 74834168 74834714 546 0
hScc1 CdLSGSE12603 74914134 74914363 229 0
hScc1 G2GSE9613 74834168 74834856 688 0
hScc1 G2GSE9613 74839943 74840547 604 0
hScc1 G2GSE9613 74914036 74914363 327 0
p63 keratinocytesGSE17611 74889037 74890081 1044 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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