AutismKB 2.0

Annotation Detail for CLPB


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Basic Information Top
Gene Symbol:CLPB ( FLJ13152,HSP78,SKD3 )
Gene Full Name: ClpB caseinolytic peptidase B homolog (E. coli)
Band: 11q13.4
Quick LinksEntrez ID:81570; OMIM: NA; Uniprot ID:CLPB_HUMAN; ENSEMBL ID: ENSG00000162129; HGNC ID: 30664
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
589N6-acetyllysine.
Location(AA) Modifications Resource
Location(AA) Modification Resource
36N-linkedHMM predict
58Phosphothreonine(PKC)HMM predict
59O-linkedHMM predict
66MethylarginineHMM predict
73MethylarginineHMM predict
103Phosphoserine(IKK)HMM predict
132PhosphoserineHMM predict
179N-linkedHMM predict
180N-linkedHMM predict
281Phosphothreonine(PKC)HMM predict
430Phosphotyrosine(INSR)HMM predict
483Phosphothreonine(PKC)HMM predict
596N-linkedHMM predict
663Phosphoserine(CDC2)HMM predict
668Phosphoserine(MAPK)HMM predict
668Phosphoserine(CDC2)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_030813
  • Location:chr11 71681119-71823215
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 71835709 71835996 287 12637
CTCF CD4SISSRdata 71835709 71835996 287 12637
ETS1 JurkatGSE17954 71822674 71824098 1424 171
FOXA1 MCF7GSE15244 71838975 71839197 222 15871
Nanog ESGSE20650 71822991 71823608 617 84
Nanog hESGSE18292 71823224 71823460 236 127
RARG MCF7GSE15244 71835968 71836315 347 12926
Sox2 hESGSE18292 71823288 71823458 170 158
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 71679626 71679761 135 1426
CTCF CD4SISSRdata 71679626 71679761 135 1426
Oct1 H2O2-HelaGSE14283 71669312 71669343 31 11792
Oct1 HelaGSE14283 71669311 71669349 38 11790
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 71802961 71803283 322 0
CTCF CD4SISSRdata 71802961 71803283 322 0
CTCF JurkatGSE12889 71802867 71803119 252 0
ER E2-MCF7GSE14664 71751630 71751664 34 0
ER E2-MCF7GSE14664 71821485 71821522 37 0
FOXA1 DLD1GSE12801 71761818 71762334 516 0
FOXA1 DLD1GSE12801 71786613 71787516 903 0
FOXA1 MCF7GSE15244 71697267 71697570 303 0
FOXA1 MCF7GSE15244 71786573 71787479 906 0
FOXA1 MCF7GSE15244 71802499 71803475 976 0
FOXA1 MCF7GSE15244 71819436 71820211 775 0
FOXA1 MCF7GSE15244 71822743 71823466 723 0
Fos K562GSE19551 71710186 71710943 757 0
GATA3 MCF7GSE15244 71696326 71697647 1321 0
GATA3 MCF7GSE15244 71767325 71768392 1067 0
GATA3 MCF7GSE15244 71822743 71823466 723 0
H3ac HepG2E 71820289 71821940 1651 0
H3ac HepG2E 71822288 71822852 564 0
Myc K562GSE19551 71802850 71803180 330 0
Myc hESGSE17917 71822848 71823145 297 0
Nanog hESGSE18292 71797453 71797747 294 0
Oct1 H2O2-HelaGSE14283 71751632 71751681 49 0
Oct1 HelaGSE14283 71743295 71743340 45 0
Oct1 HelaGSE14283 71751631 71751673 42 0
Oct1 HelaGSE14283 71821482 71821520 38 0
P300 T0-glioblastomaGSE21026 71822771 71823586 815 0
P300 T30-glioblastomaGSE21026 71822550 71823765 1215 0
PHF8 HeLaGSE20725 71822442 71823643 1201 0
RARA MCF7GSE15244 71697161 71697710 549 0
RARA MCF7GSE15244 71741630 71742207 577 0
RARA MCF7GSE15244 71786720 71787516 796 0
RARA MCF7GSE15244 71802499 71803475 976 0
RARG MCF7GSE15244 71786613 71787479 866 0
TFAP2C MCF7GSE21234 71741426 71742088 662 0
hScc1 BcellGSE12603 71802536 71803134 598 0
hScc1 BcellGSE12603 71819508 71820245 737 0
hScc1 CdLSGSE12603 71741470 71742135 665 0
hScc1 CdLSGSE12603 71802499 71803451 952 0
hScc1 CdLSGSE12603 71819436 71820325 889 0
hScc1 G2GSE9613 71802499 71803134 635 0
hScc1 G2GSE9613 71819471 71820245 774 0
p130 QuiescentGSE19898 71822975 71823456 481 0
p130 SenescentGSE19898 71822695 71823542 847 0
p130 shRbQuiescentGSE19898 71822632 71823523 891 0
p130 shRbSenescentGSE19898 71822823 71823412 589 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
4859 EST chr11 71740080 71752247 12167 mRNA SKD3 chr11 71681119 71823216 Non-exonic Bidirectional (NOB) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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