AutismKB 2.0

Annotation Detail for CLTCL1


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Basic Information Top
Gene Symbol:CLTCL1 ( CHC22,CLH22,CLTCL,CLTD,FLJ36032 )
Gene Full Name: clathrin, heavy chain-like 1
Band: 22q11.21
Quick LinksEntrez ID:8218; OMIM: 601273; Uniprot ID:CLH2_HUMAN; ENSEMBL ID: ENSG00000070371,ENSG00000249108; HGNC ID: 2093
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
103Phosphothreonine.
450N6-acetyllysine.
764N6-acetyllysine.
1096Phosphotyrosine.
1449N6-acetyllysine.
Location(AA) Modifications Resource
103Phosphothreonine.Swiss-Prot 53.0
103PhosphothreoninePhospho.ELM 6.0
1462PhosphoserinePhospho.ELM 6.0
Location(AA) Modification Resource
67Phosphoserine(PKG)HMM predict
136Phosphoserine(ATM)HMM predict
191Phosphoserine(PKG)HMM predict
222N-linkedHMM predict
285Phosphotyrosine(INSR)HMM predict
306O-linkedHMM predict
545N-linkedHMM predict
630SulfotyrosineHMM predict
659Phosphoserine(ATM)HMM predict
720N-linkedHMM predict
722Phosphoserine(ATM)HMM predict
799Phosphotyrosine(EGFR)HMM predict
799Phosphotyrosine(INSR)HMM predict
808N-linkedHMM predict
887N-linkedHMM predict
888N-linkedHMM predict
889PhosphoserineHMM predict
899Phosphotyrosine(Syk)HMM predict
900Phosphotyrosine(EGFR)HMM predict
964N-linkedHMM predict
1019Phosphoserine(CK1)HMM predict
1078N-linkedHMM predict
1167Phosphoserine(PKG)HMM predict
1168Phosphotyrosine(EGFR)HMM predict
1168Phosphotyrosine(INSR)HMM predict
1184Phosphoserine(PKG)HMM predict
1184Phosphoserine(CK2)HMM predict
1211Phosphotyrosine(EGFR)HMM predict
1211Phosphotyrosine(SRC)HMM predict
1220N-linkedHMM predict
1223N-linkedHMM predict
1248Phosphoserine(CDC2)HMM predict
1248Phosphoserine(PKG)HMM predict
1248Phosphoserine(PKC)HMM predict
1250Phosphothreonine(PKC)HMM predict
1290Phosphotyrosine(Syk)HMM predict
1368Phosphotyrosine(Syk)HMM predict
1371Phosphotyrosine(INSR)HMM predict
1427Phosphoserine(MAPK)HMM predict
1477Phosphotyrosine(EGFR)HMM predict
1477Phosphotyrosine(Syk)HMM predict
1477SulfotyrosineHMM predict
1534Phosphotyrosine(Syk)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_007098
  • Location:chr22 17546988-17659238
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 17660032 17660337 305 946
H3ac HepG2E 17660032 17660754 722 1155
RARA MCF7GSE15244 17660032 17660373 341 964
hScc1 CdLSGSE12603 17658839 17659667 828 15
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 17546700 17547273 573 2
p130 QuiescentGSE19898 17546627 17546897 270 227
p130 SenescentGSE19898 17546469 17546983 514 263
p130 shRbSenescentGSE19898 17546491 17546870 379 308
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 17547014 17547199 185 0
CTCF CD4GSE12889 17585512 17585732 220 0
CTCF CD4SISSRdata 17547014 17547199 185 0
CTCF CD4SISSRdata 17585512 17585732 220 0
CTCF G2GSE9613 17625960 17626356 396 0
CTCF G2GSE9613 17658567 17659429 862 0
ER Breast-CancerGSE22609 17657871 17658331 460 0
FOXA1 MCF7GSE15244 17599963 17600833 870 0
FoxA1 MCF7MACSdata 17600208 17600510 302 0
H3K4me3 colorectalcancer 17658650 17659183 533 0
NRSF JurkatGSE13047 17569399 17569967 568 0
NRSF mAbJurkat 17569023 17569734 711 0
NRSF-mono JurkatQuESTdata 17569398 17569790 392 0
Nanog hESGSE18292 17647242 17647649 407 0
Oct4 hESGSE21916 17580947 17581358 411 0
Sox2 hESGSE18292 17585528 17585953 425 0
TFAP2C MCF7GSE21234 17548482 17549093 611 0
TFAP2C MCF7GSE21234 17550829 17551676 847 0
TFAP2C MCF7GSE21234 17552391 17553002 611 0
hScc1 BcellGSE12603 17546053 17547953 1900 0
hScc1 BcellGSE12603 17548659 17549413 754 0
hScc1 BcellGSE12603 17565935 17566356 421 0
hScc1 BcellGSE12603 17609239 17609435 196 0
hScc1 BcellGSE12603 17626097 17626356 259 0
hScc1 BcellGSE12603 17658507 17659605 1098 0
hScc1 CdLSGSE12603 17546867 17547381 514 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
17140 HTC chr22 17558423 17577898 874 mRNA CLTCL1 chr22 17541542 17653762Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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