AutismKB 2.0

Annotation Detail for USP9X


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Basic Information Top
Gene Symbol:USP9X ( DFFRX,FAF,FAM )
Gene Full Name: ubiquitin specific peptidase 9, X-linked
Band: Xp11.4
Quick LinksEntrez ID:8239; OMIM: 300072; Uniprot ID:USP9X_HUMAN; ENSEMBL ID: ENSG00000124486; HGNC ID: 12632
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
590Phosphothreonine.
1600Phosphoserine.
1815Phosphotyrosine (By similarity).
2443Phosphoserine.
2556Phosphotyrosine.
2563Phosphoserine.
Location(AA) Modifications Resource
1593Phosphoserine.Swiss-Prot 53.0
1593PhosphoserinePhospho.ELM 6.0
2533Phosphotyrosine.Swiss-Prot 53.0
2533PhosphotyrosinePhospho.ELM 6.0
2540Phosphoserine.Swiss-Prot 53.0
Location(AA) Modification Resource
8Phosphoserine(CDC2)HMM predict
31N-linkedHMM predict
35Phosphoserine(CDC2)HMM predict
35Phosphoserine(IKK)HMM predict
38Phosphoserine(CK2)HMM predict
38Phosphoserine(IKK)HMM predict
39O-linkedHMM predict
43Phosphoserine(IKK)HMM predict
43Phosphoserine(CDC2)HMM predict
46Phosphothreonine(MAPK)HMM predict
181N-linkedHMM predict
191Phosphoserine(CK1)HMM predict
204Phosphoserine(CDC2)HMM predict
236N-linkedHMM predict
241N-linkedHMM predict
281N-linkedHMM predict
420Phosphothreonine(PKC)HMM predict
534Phosphoserine(ATM)HMM predict
579N-linkedHMM predict
583Phosphothreonine(PKC)HMM predict
607Phosphothreonine(PKC)HMM predict
630Phosphotyrosine(Syk)HMM predict
630Phosphotyrosine(Jak)HMM predict
859Phosphoserine(CK1)HMM predict
902N-linkedHMM predict
911S-palmitoylHMM predict
968Phosphoserine(CDC2)HMM predict
968Phosphoserine(ATM)HMM predict
971Phosphoserine(IKK)HMM predict
971O-linkedHMM predict
972O-linkedHMM predict
973Phosphoserine(CK1)HMM predict
975Phosphoserine(CK1)HMM predict
975Phosphoserine(IKK)HMM predict
979Phosphoserine(CDC2)HMM predict
1066Phosphoserine(MAPK)HMM predict
1066Phosphoserine(ATM)HMM predict
1197Phosphoserine(IKK)HMM predict
1200N-linkedHMM predict
1300Phosphoserine(CK1)HMM predict
1337S-palmitoylHMM predict
1467Phosphotyrosine(Syk)HMM predict
1487Phosphoserine(CDC2)HMM predict
1487Phosphoserine(IKK)HMM predict
1547O-linkedHMM predict
1586Phosphoserine(CK2)HMM predict
1593Phosphoserine(CK2)HMM predict
1600N-linkedHMM predict
1603N-linkedHMM predict
1624Phosphoserine(CK1)HMM predict
1720S-palmitoylHMM predict
1750Phosphotyrosine(INSR)HMM predict
1762Phosphotyrosine(Jak)HMM predict
1773Phosphothreonine(PKC)HMM predict
1795SulfotyrosineHMM predict
1846Phosphoserine(CK1)HMM predict
1848Phosphoserine(CK1)HMM predict
1848Phosphoserine(CK2)HMM predict
1918Phosphotyrosine(INSR)HMM predict
1931Phosphoserine(PKA)HMM predict
2128Phosphoserine(CDC2)HMM predict
2128O-linkedHMM predict
2132Phosphoserine(CDK)HMM predict
2132Phosphoserine(CDC2)HMM predict
2132PhosphoserineHMM predict
2132O-linkedHMM predict
2140Phosphotyrosine(INSR)HMM predict
2140Phosphotyrosine(Syk)HMM predict
2258Phosphoserine(ATM)HMM predict
2434N-linkedHMM predict
2441O-linkedHMM predict
2442N-linkedHMM predict
2446N-linkedHMM predict
2459Phosphothreonine(PKC)HMM predict
2483Phosphoserine(ATM)HMM predict
2495Phosphoserine(MAPK)HMM predict
2533Phosphotyrosine(Syk)HMM predict
2533SulfotyrosineHMM predict
2540Phosphoserine(IKK)HMM predict
2540Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001039590
  • Location:chrX 40829831-40980773
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 40828587 40828737 150 1170
ETS1 JurkatGSE17954 40828304 40829454 1150 953
Gata1 K562GSE18868 40828474 40829214 740 988
Gata2 K562GSE18868 40828356 40829223 867 1042
PHF8 293TGSE20725 40828457 40831136 2679 35
PHF8 Hs68plusFBSGSE20725 40828108 40830320 2212 618
TAF k562GSE8489 40827974 40828690 716 1500
USF1 HepG2E 40828192 40829328 1136 1072
USF2 HepG2E 40828192 40829328 1136 1072
hScc1 BcellGSE12603 40828690 40829976 1286 499
hScc1 CdLSGSE12603 40828551 40830778 2227 167
hScc1 G2GSE9613 40828690 40830118 1428 428
p130 QuiescentGSE19898 40828964 40829445 481 627
p130 SenescentGSE19898 40828836 40829552 716 638
p130 shRbQuiescentGSE19898 40828956 40829453 497 627
p130 shRbSenescentGSE19898 40828955 40829339 384 685
p63 keratinocytesGSE17611 40810539 40811225 686 18950
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 40997969 40998151 182 17287
CTCF CD4SISSRdata 40997969 40998151 182 17287
CTCF HelaGSE12889 40997978 40998150 172 17291
CTCF G2GSE9613 40994077 40994391 314 13461
CTCF G2GSE9613 40997458 40998232 774 17072
KLF4 hESGSE17917 40987576 40987794 218 6912
Myc K562GSE19551 40997989 40998267 278 17355
Oct4 hESGSE17917 40997660 40998073 413 17093
P300 T0-glioblastomaGSE21026 40989727 40990201 474 9191
hScc1 BcellGSE12603 40997523 40998232 709 17104
hScc1 CdLSGSE12603 40997523 40998232 709 17104
hScc1 G2GSE9613 40994077 40994391 314 13461
hScc1 G2GSE9613 40997040 40998232 1192 16863
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 40881793 40882070 277 0
CTCF CD4SISSRdata 40881793 40882070 277 0
CTCF G2GSE9613 40829041 40830741 1700 0
CTCF G2GSE9613 40924059 40924638 579 0
FoxA1 MCF7MACSdata 40942719 40942827 108 0
H3ac HepG2E 40831055 40831764 709 0
Oct1 HelaGSE14283 40897855 40897886 31 0
Oct1 HelaGSE14283 40926318 40926354 36 0
RARG MCF7GSE15244 40839315 40839929 614 0
TAF k562GSE8489 40830983 40833833 2850 0
hScc1 CdLSGSE12603 40859464 40859673 209 0
hScc1 CdLSGSE12603 40924429 40924953 524 0
p130 shRbQuiescentGSE19898 40892427 40892868 441 0
p130 shRbSenescentGSE19898 40830149 40830585 436 0
p63 keratinocytesGSE17611 40936839 40937673 834 0
Validated miRNA targets Top
Micro RNA Name Stem Loop Name The chromosome that miRNA located Publication
hsa-miR-155 hsa-mir-155 21 20356498
hsa-miR-155* hsa-mir-155 21 20356498
hsa-miR-15a hsa-mir-15a 13 19714650
hsa-miR-15a* hsa-mir-15a 13 19714650
No data
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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