AutismKB 2.0

Annotation Detail for CAPN2


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:CAPN2 ( CANP2,CANPL2,CANPml,FLJ39928,mCANP )
Gene Full Name: calpain 2, (m/II) large subunit
Band: 1q41
Quick LinksEntrez ID:824; OMIM: 114230; Uniprot ID:CAN2_HUMAN; ENSEMBL ID: ENSG00000162909; HGNC ID: 1479
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
No data
No data
Location(AA) Modification Resource
32Phosphotyrosine(Syk)HMM predict
79Phosphothreonine(PKA)HMM predict
128N-linkedHMM predict
134N-linkedHMM predict
250O-linkedHMM predict
275N-linkedHMM predict
316Phosphothreonine(PKA)HMM predict
316Phosphothreonine(PKC)HMM predict
342N-linkedHMM predict
369Phosphoserine(PKA)HMM predict
434Phosphotyrosine(INSR)HMM predict
434Phosphotyrosine(Syk)HMM predict
503Phosphoserine(PKC)HMM predict
526Phosphoserine(CK2)HMM predict
611Phosphotyrosine(Syk)HMM predict
621Phosphothreonine(PKC)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_001748
  • Location:chr1 221966823-222030340
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 221950527 221951149 622 15986
CTCF G2GSE9613 221952579 221952973 394 14048
CTCF G2GSE9613 221966493 221967081 588 37
ER MCF7GSE19013 221954171 221955703 1532 11887
FOXA1 MCF7GSE15244 221960351 221960918 567 6189
Fos K562GSE19551 221961327 221962447 1120 4937
FoxA1 MCF7MACSdata 221960819 221961027 208 5901
RARA MCF7GSE15244 221961429 221962399 970 4910
hScc1 BcellGSE12603 221950678 221951149 471 15910
hScc1 BcellGSE12603 221952540 221952973 433 14067
hScc1 BcellGSE12603 221966493 221967081 588 37
hScc1 CdLSGSE12603 221952284 221952973 689 14195
hScc1 G2GSE9613 221952284 221952973 689 14195
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
NRSF JurkatSISSRdata 222030390 222030512 122 111
NRSF-poly JurkatQuESTdata 222030401 222030701 300 211
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 222003540 222003807 267 0
CTCF CD4SISSRdata 222003540 222003807 267 0
CTCF G2GSE9613 221985794 221986188 394 0
CTCF G2GSE9613 221990404 221990552 148 0
CTCF G2GSE9613 222002859 222003717 858 0
CTCF G2GSE9613 222008455 222008634 179 0
CTCF G2GSE9613 222009008 222009661 653 0
FOXA1 MCF7GSE15244 221973897 221974594 697 0
FOXA1 MCF7GSE15244 221975233 221975953 720 0
Fos K562GSE19551 221980607 221981569 962 0
FoxA1 MCF7MACSdata 221975284 221975623 339 0
NFkBII GM12878GSE19485 221980292 221981869 1577 0
NFkBII GM12892GSE19485 221979530 221981950 2420 0
Nanog hESGSE18292 221984342 221984520 178 0
PHF8 HeLaGSE20725 221966453 221967525 1072 0
RARA MCF7GSE15244 221973897 221974594 697 0
RARA MCF7GSE15244 221975233 221975953 720 0
RARG MCF7GSE15244 221975233 221975990 757 0
Rb GrowingGSE19898 221973194 221973475 281 0
Rb GrowingGSE19898 221985814 221986008 194 0
Rb QuiescentGSE19898 221973299 221973624 325 0
Rb SenescentGSE19898 221967652 221968011 359 0
Rb shRbQuiescentGSE19898 221973160 221973425 265 0
TAF k562GSE8489 221968088 221969078 990 0
TFAP2C MCF7GSE21234 221969663 221970086 423 0
TFAP2C MCF7GSE21234 221974971 221976074 1103 0
TFAP2C MCF7GSE21234 222010257 222010897 640 0
hScc1 BcellGSE12603 221985582 221985937 355 0
hScc1 BcellGSE12603 221989875 221990077 202 0
hScc1 BcellGSE12603 222002696 222003717 1021 0
hScc1 BcellGSE12603 222027262 222027546 284 0
hScc1 CdLSGSE12603 221966493 221967851 1358 0
hScc1 CdLSGSE12603 222003243 222003786 543 0
p130 SenescentGSE19898 221969204 221969417 213 0
p130 shRbSenescentGSE19898 221967954 221968326 372 0
Validated miRNA targets Top
Cis-Nats regulation Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved