AutismKB 2.0

Annotation Detail for KDM5C


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Basic Information Top
Gene Symbol:KDM5C ( DXS1272E,JARID1C,MRXJ,MRXSJ,SMCX,XE169 )
Gene Full Name: lysine (K)-specific demethylase 5C
Band: Xp11.22
Quick LinksEntrez ID:8242; OMIM: 314690; Uniprot ID:KDM5C_HUMAN; ENSEMBL ID: ENSG00000126012; HGNC ID: 11114
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
317Phosphoserine.
1359Phosphoserine.
Location(AA) Modifications Resource
No data
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004187
  • Location:chrX 53237378-53271328
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
FOXA1 MCF7GSE15244 53271722 53272610 888 838
Oct1 HelaGSE14283 53274382 53274421 39 3073
TAF k562GSE8489 53270942 53272610 1668 448
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 53236403 53236951 548 702
ER Fulvestrant-MCF7GSE14664 53234860 53234903 43 2497
Oct1 H2O2-HelaGSE14283 53222197 53222224 27 15168
Oct1 H2O2-HelaGSE14283 53226161 53226192 31 11202
Oct1 HelaGSE14283 53226151 53226204 53 11201
Oct1 HelaGSE14283 53234769 53234811 42 2589
Oct1 HelaGSE14283 53234847 53234904 57 2503
hScc1 G2GSE9613 53232112 53232391 279 5127
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 53238383 53239740 1357 0
CTCF G2GSE9613 53240262 53240785 523 0
CTCF G2GSE9613 53241439 53241879 440 0
CTCF G2GSE9613 53242681 53242854 173 0
CTCF G2GSE9613 53243475 53243645 170 0
CTCF G2GSE9613 53244543 53244919 376 0
CTCF G2GSE9613 53247629 53247809 180 0
CTCF G2GSE9613 53256130 53256420 290 0
CTCF G2GSE9613 53268186 53268549 363 0
CTCF G2GSE9613 53268849 53269532 683 0
CTCF G2GSE9613 53270556 53271284 728 0
ETS1 JurkatGSE17954 53270743 53271907 1164 0
FOXA1 MCF7GSE15244 53269640 53270381 741 0
FOXA1 MCF7GSE15244 53271009 53271467 458 0
H3K4me2 HCT116GSE10453 53269385 53269994 609 0
H3K4me3 colorectalcancer 53269212 53270353 1141 0
H3ac HepG2E 53267736 53270497 2761 0
Oct1 H2O2-HelaGSE14283 53249853 53249893 40 0
Oct1 H2O2-HelaGSE14283 53249995 53250034 39 0
Oct1 HelaGSE14283 53249854 53249894 40 0
Oct1 HelaGSE14283 53249999 53250034 35 0
P300 T0-glioblastomaGSE21026 53270933 53271547 614 0
P300 T30-glioblastomaGSE21026 53270595 53271862 1267 0
PHF8 293TGSE20725 53270496 53271892 1396 0
PHF8 HeLaGSE20725 53270431 53271717 1286 0
PHF8 Hs68minusFBSGSE20725 53270532 53271963 1431 0
PHF8 Hs68plusFBSGSE20725 53270169 53271772 1603 0
Rb GrowingGSE19898 53271026 53271202 176 0
TAF k562GSE8489 53268622 53270676 2054 0
hScc1 BcellGSE12603 53238715 53239445 730 0
hScc1 G2GSE9613 53238966 53240505 1539 0
hScc1 G2GSE9613 53242574 53242854 280 0
hScc1 G2GSE9613 53269280 53269602 322 0
hScc1 G2GSE9613 53270353 53271166 813 0
p130 QuiescentGSE19898 53270747 53271579 832 0
p130 SenescentGSE19898 53270584 53271205 621 0
p130 shRbQuiescentGSE19898 53270321 53271615 1294 0
p130 shRbSenescentGSE19898 53270699 53271746 1047 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
27684 HTC chrX 53104918 53106903 329 mRNA SMCX chrX 53104473 53137625Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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