Annotation Detail for SNN

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Basic Information Top

Gene Symbol:	SNN ( - )
Gene Full Name:	stannin
Band:	16p13.13
Quick Links	Entrez ID:8303; OMIM: 603032; Uniprot ID:SNN_HUMAN; ENSEMBL ID: ENSG00000184602; HGNC ID: 11149
Relate to Another Database:	SFARIGene; denovo-db

Pathways, Diseases and Drugs

TF binding site

Post Translation Modification

PTM Sites from Uniprot:1 results
Experimental PTM Sites from dbPTM:1 results
Predicted PTM Sites by profile HMM from dbPTM:6 results

Location(AA)	Modification
49	Phosphoserine (By similarity).

Location(AA)	Modification	Resource
34	S-palmitoyl	HMM predict
42	Phosphoserine(PKG)	HMM predict
42	Phosphoserine(ATM)	HMM predict
42	Phosphoserine	HMM predict
44	Phosphoserine(CK2)	HMM predict
49	Phosphoserine(CK1)	HMM predict

Validated transcription factor binding site by ChIP-Chip and ChIP-Seq

RefSeq ID: NM_003498
Location:chr16 11669801-11680506
strand:+

Upstream the gene:13 results
Downstream the gene:0 results
Inside the gene:10 results

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	11664560	11664792	232	5126
NFkBII	GM12878	GSE19485	11656557	11657587	1030	12730
NFkBII	GM12892	GSE19485	11656455	11657765	1310	12692
NRSF	Jurkat	GSE13047	11651466	11651953	487	18092
NRSF	Jurkat	SISSRdata	11651556	11652078	522	17985
NRSF	mAb	Jurkat	11652257	11653395	1138	16976
NRSF-mono	Jurkat	QuESTdata	11651465	11651946	481	18096
NRSF-poly	Jurkat	QuESTdata	11651645	11651946	301	18006
Rb	Senescent	GSE19898	11651662	11651858	196	18042
USF1	HepG2	E	11668500	11669395	895	854
hScc1	Bcell	GSE12603	11659037	11659221	184	10673
p130	Senescent	GSE19898	11669377	11669616	239	305
p63	keratinocytes	GSE17611	11660024	11661223	1199	9178

Transcrip Factors	Experimental Cell	Database	TF Binding Start	TF Binding End	TF Binding Length	The Distance to Gene
CTCF	G2	GSE9613	11670508	11670772	264	0
CTCF	G2	GSE9613	11675710	11675929	219	0
NFkBII	GM12878	GSE19485	11670591	11672556	1965	0
NFkBII	GM12892	GSE19485	11670269	11672378	2109	0
RARA	MCF7	GSE15244	11676937	11677440	503	0
TFAP2C	MCF7	GSE21234	11676817	11677483	666	0
VDR	GM10855-stim	GSE22484	11670390	11672555	2165	0
VDR	GM10861-stim	GSE22484	11670572	11672670	2098	0
VDR	GM10861-stim	GSE22484	11673825	11675498	1673	0
hScc1	Bcell	GSE12603	11670466	11671055	589	0

Validated miRNA targets

Cis-Nats regulation

Cluster ID	Plue Type	Plus Gene Name	Plus Chromosome	Plus Start	Plus End	Overlap Length	Minus Type	Minus Gene Name	Minus Chromosome	Minus Star	Minus End	Type
9626	mRNA	SNN	chr16	11669817	11680508	65	mRNA	TXNDC11	chr16	11680443	11744149	Sense/Antisense (SA) pairs

Simple Query:

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

Studies: 1,036
Genes: 1,379
CNVs/SVs: 5,420
SNVs/Indels: 11,669
de novo Mutations: 5,669
Mosaics: 789
Linkage Regions: 172

Paper Collected: 6/30/2018

Last Update: 8/26/2018

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