AutismKB 2.0

Annotation Detail for COG3


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Basic Information Top
Gene Symbol:COG3 ( SEC34 )
Gene Full Name: component of oligomeric golgi complex 3
Band: 13q14.13
Quick LinksEntrez ID:83548; OMIM: 606975; Uniprot ID:COG3_HUMAN; ENSEMBL ID: ENSG00000136152; HGNC ID: 18619
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
2N-acetylalanine.
533Phosphoserine.
663Phosphoserine.
Location(AA) Modifications Resource
2N-acetylalanine.Swiss-Prot 53.0
533Phosphoserine (By similarity).Swiss-Prot 53.0
Location(AA) Modification Resource
42Phosphoserine(IKK)HMM predict
66Phosphoserine(CK1)HMM predict
66Phosphoserine(MAPK)HMM predict
127Phosphotyrosine(Abl)HMM predict
167N-linkedHMM predict
212Phosphoserine(CDK)HMM predict
216Phosphoserine(ATM)HMM predict
384Phosphotyrosine(EGFR)HMM predict
384Phosphotyrosine(Syk)HMM predict
392Phosphothreonine(PKA)HMM predict
514Phosphoserine(IKK)HMM predict
534Phosphothreonine(CK2)HMM predict
546Phosphoserine(CDC2)HMM predict
561Phosphothreonine(PKA)HMM predict
581Phosphoserine(ATM)HMM predict
602N-linkedHMM predict
736Phosphoserine(ATM)HMM predict
805Phosphoserine(ATM)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_031431
  • Location:chr13 44937071-45008759
  • strand:+
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
ETS1 JurkatGSE17954 44936559 44937580 1021 2
GABP HelaGSE8489 44936705 44936979 274 230
GABP k562GSE8489 44930726 44931980 1254 5719
GABP k562GSE8489 44934819 44935287 468 2019
GABP k562GSE8489 44936705 44937381 676 29
Nanog hESGSE18292 44919549 44919717 168 17439
Nanog hESGSE18292 44936674 44937030 356 220
Oct4 hESGSE17917 44936915 44937159 244 35
p130 shRbSenescentGSE19898 44928935 44929203 268 8003
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 45010646 45010931 285 2029
CTCF G2GSE9613 45014507 45014732 225 5860
RARG MCF7GSE15244 45010571 45010953 382 2003
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 44945860 44946019 159 0
CTCF CD4GSE12889 44962243 44962541 298 0
CTCF CD4GSE12889 44983695 44984148 453 0
CTCF CD4SISSRdata 44945860 44946019 159 0
CTCF CD4SISSRdata 44962243 44962541 298 0
CTCF CD4SISSRdata 44983695 44984148 453 0
CTCF G2GSE9613 44936847 44937672 825 0
CTCF G2GSE9613 44983751 44984003 252 0
ER E2-MCF7GSE14664 44965985 44966019 34 0
ER Fulvestrant-MCF7GSE14664 44965986 44966020 34 0
ER Fulvestrant-MCF7GSE14664 44997018 44997056 38 0
FoxA1 MCF7MACSdata 44999971 45000180 209 0
H3K4me3 colorectalcancer 44937771 44938170 399 0
H3ac HepG2E 44937771 44938170 399 0
Myc hESGSE17917 44937162 44937451 289 0
Oct1 HelaGSE14283 44965987 44966018 31 0
Oct1 HelaGSE14283 44997357 44997386 29 0
P300 T30-glioblastomaGSE21026 44936553 44937618 1065 0
PHF8 HeLaGSE20725 44936589 44937775 1186 0
RARG MCF7GSE15244 44999646 44999993 347 0
TFAP2C MCF7GSE21234 44999933 45000434 501 0
hScc1 BcellGSE12603 44936705 44937453 748 0
p63 keratinocytesGSE17611 44954520 44955397 877 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
7157 mRNA COG3 chr13 44937071 45008760 275 mRNA chr13 44934941 44937631Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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