AutismKB 2.0

Annotation Detail for SPARCL1


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Basic Information Top
Gene Symbol:SPARCL1 ( PIG33,SC1 )
Gene Full Name: SPARC-like 1 (hevin)
Band: 4q22.1
Quick LinksEntrez ID:8404; OMIM: 606041; Uniprot ID:SPRL1_HUMAN; ENSEMBL ID: ENSG00000152583; HGNC ID: 11220
Relate to Another Database: SFARIGene; denovo-db
Post Translation Modification Top
Location(AA) Modification
76Phosphoserine (By similarity).
169N-linked (GlcNAc...) (Potential).
176N-linked (GlcNAc...) (Potential).
196N-linked (GlcNAc...) (Potential).
280N-linked (GlcNAc...) (Potential).
398O-linked (GalNAc...) (Probable).
399O-linked (GalNAc...) (Probable).
412N-linked (GlcNAc...).
476N-linked (GlcNAc...) (Potential).
Location(AA) Modifications Resource
169N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
176N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
196N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
280N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
412N-linked (GlcNAc...).Swiss-Prot 53.0
476N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
Location(AA) Modification Resource
9S-palmitoylHMM predict
28Phosphoserine(CK1)HMM predict
59Phosphoserine(CK2)HMM predict
80Phosphoserine(CK1)HMM predict
92Phosphoserine(ATM)HMM predict
127Phosphoserine(CK1)HMM predict
135Phosphoserine(CK2)HMM predict
169N-linkedHMM predict
176N-linkedHMM predict
179Phosphoserine(CK1)HMM predict
311Phosphothreonine(CDK)HMM predict
329N-linkedHMM predict
331Phosphothreonine(MAPK)HMM predict
331Phosphothreonine(CDC2)HMM predict
334N-linkedHMM predict
361SulfotyrosineHMM predict
412N-linkedHMM predict
413Phosphoserine(CK2)HMM predict
414Phosphoserine(CK2)HMM predict
414Phosphoserine(CK1)HMM predict
415N-linkedHMM predict
420Phosphoserine(CK2)HMM predict
420Phosphoserine(CK1)HMM predict
476N-linkedHMM predict
511Phosphoserine(IKK)HMM predict
588Phosphotyrosine(Abl)HMM predict
619Phosphoserine(PKG)HMM predict
Validated transcription factor binding site by ChIP-Chip and ChIP-Seq
  • RefSeq ID: NM_004684
  • Location:chr4 88613513-88669529
  • strand:-
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF G2GSE9613 88683932 88684409 477 14641
Oct1 H2O2-HelaGSE14283 88688346 88688391 45 18839
Oct1 HelaGSE14283 88688332 88688411 79 18842
hScc1 G2GSE9613 88683932 88684480 548 14677
p63 keratinocytesGSE17611 88670864 88671550 686 1678
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 88605979 88606305 326 7372
CTCF CD4SISSRdata 88605979 88606305 326 7372
hScc1 BcellGSE12603 88605921 88606159 238 7474
hScc1 G2GSE9613 88605886 88606159 273 7491
Transcrip Factors Experimental Cell Database TF Binding Start TF Binding End TF Binding Length The Distance to Gene
CTCF CD4GSE12889 88637451 88637600 149 0
CTCF CD4SISSRdata 88637451 88637600 149 0
CTCF G2GSE9613 88637367 88637627 260 0
FOXA1 MCF7GSE15244 88632636 88633400 764 0
FOXA1 eGFPGSE10845 88632636 88633400 764 0
Nanog hESGSE18292 88660611 88660998 387 0
Oct1 H2O2-HelaGSE14283 88623318 88623349 31 0
Oct1 H2O2-HelaGSE14283 88632849 88632906 57 0
Oct1 H2O2-HelaGSE14283 88653489 88653523 34 0
Oct1 HelaGSE14283 88630136 88630163 27 0
Oct1 HelaGSE14283 88641955 88641984 29 0
Oct1 HelaGSE14283 88653490 88653523 33 0
P300 T30-glioblastomaGSE21026 88661749 88662621 872 0
Sox2 hESGSE18292 88660542 88661228 686 0
p130 shRbQuiescentGSE19898 88647722 88648089 367 0
Validated miRNA targets Top
Cis-Nats regulation Top
Cluster ID Plue Type Plus Gene Name Plus Chromosome Plus Start Plus End Overlap Length Minus Type Minus Gene Name Minus Chromosome Minus Star Minus End Type
19943 EST chr4 88720220 88761138 113 mRNA SPARCL1 chr4 88751668 88807685Sense/Antisense (SA) pairs

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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